Also, I really appreciate you explaining why you used factor.  I'm still not
quite sure what set.seed does (i read ?set.seed) or why you chose 123... but
it and the function below work, so that is all that matters.  :)

randSub <- function(L1, s.size)
{
set.seed(123)   
samptbl <- apply(L1, 1, function(x) sample(colnames(L1), s.size, prob=x,
replace=TRUE) ) 
sampdf <- as.data.frame(samptbl) 
sampdf1 <-vector("list")
for(i in 1:nrow(L1))
{               
sampdf1[[i]] <-  factor(sampdf[[i]], levels= colnames(L1)) 
}   
out <- t(sapply(sampdf1, table)) 
}
-- 
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