Dear Prof. Brian Ripley,
Thank you for your kind advice. I have to report to you that I attempted to
save the ff file at a shared directory between guest OS (Linux) and host OS
(Windows 7).
I tried to change the working directory as an unshared folder, and then I
tried the same commands. In this case, I had no problem as you did. In
conclusion, the ff package does not support to assign memory for shared
folders between guest OS and host OS.
For your reference, my experiments were done in the following environment.
R version 2.12.1 (2010-12-16)
Platform: i686-pc-linux-gnu (32-bit)
I appreciate you for your help.
Best Regards,
Ryan
2011/2/2 Prof Brian Ripley <rip...@stats.ox.ac.uk>
> This is clearly a problem occuring in the C code of the ff package. Please
> report to the package maintainer, Cced here (with the 'at a minimum'
> information requested in the posting guide, most importantly the Linux
> architecture and the versions involved).
>
> FWIW it works for me on
>
> sessionInfo()
>>
> R version 2.12.1 (2010-12-16)
> Platform: x86_64-unknown-linux-gnu (64-bit)
> ...
> other attached packages:
> [1] ff_2.2-1 bit_1.1-6
>
> If possible, try running this under valgrind (see 'Writing R Extensions')
> to get more info on the cause: at least run under gdb to get more precise
> info on what was not mapped.
>
> You don't say what the host OS of VirtualBox was. We've found I/O under
> VirtualBox with a x86_64 Linux host to be slow, but R to run reliably.
>
>
> On Wed, 2 Feb 2011, Wonsang You wrote:
>
>
>> Dear R Helpers,
>>
>> I would like to report on an error in the ff package here.
>> The ff package is an R package which enables us to store large data on
>> disk
>> systematically and have fast access to the database.
>> I used the package in Linux as a guest OS of VirtualBox, and executed the
>> following commands.
>>
>> library(ff)
>> x<-ff(1:5,length=5,update=TRUE,vmode="double",filename="header.ff",
>>
> overwrite=TRUE)
>
>>
>> Afterwards, I got the following error message.
>>
>> *** caught segfault ***
>> address 0xffffffff, cause 'memory not mapped'
>>
>> Traceback:
>> 1: .Call("get_vector", .ffmode[vmode], attr(x, "physical"), index,
>> nreturn, PACKAGE = "ff")
>> 2: `[.ff`(ret, 1)
>> 3: ret[1]
>> 4: as.vector(ret[1])
>> 5: identical(as.vector(initdata[1]), as.vector(ret[1]))
>> 6: ff(1:5, length = 5, update = TRUE, vmode = "double", filename =
>> "header.ff", overwrite = TRUE)
>>
>> Possible actions:
>> 1: abort (with core dump, if enabled)
>> 2: normal R exit
>> 3: exit R without saving workspace
>> 4: exit R saving workspace
>> Selection:
>>
>> Can anyone give an advice to solve the problem?
>>
>> Best Regards,
>> Ryan
>>
>> -----
>> Wonsang You
>> Leibniz Institute for Neurobiology
>> --
>> View this message in context:
>> http://r.789695.n4.nabble.com/Error-of-memory-not-mapped-in-ff-Package-with-VirtualBox-tp3253856p3253856.html
>> Sent from the R help mailing list archive at Nabble.com.
>>
>> ______________________________________________
>> R-help@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>>
> --
> Brian D. Ripley, rip...@stats.ox.ac.uk
> Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
> University of Oxford, Tel: +44 1865 272861 (self)
> 1 South Parks Road, +44 1865 272866 (PA)
> Oxford OX1 3TG, UK Fax: +44 1865 272595
>
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