Patrik -
I don't know if it's the fastest, but, assuming your Matrix is called mat, this seems to work fairly quickly:

wh =  which(is.na(mat),arr.ind=TRUE)
mat[wh] = apply(mat,2,mean,na.rm=TRUE)[wh[,2]]

                                        - Phil Spector
                                         Statistical Computing Facility
                                         Department of Statistics
                                         UC Berkeley
                                         spec...@stat.berkeley.edu


On Wed, 15 Dec 2010, patrik.waldm...@djingis.se wrote:



        Dear All,

        ??

        does anyone know which is the fastest way to replace NA values in a
Matrix by their column mean?

        library(Matrix)
mat

Links:
------
[1] http://www.ownit.se


        [[alternative HTML version deleted]]



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