Hi,
I am unable to install packages on my R 2.12.0 Windows 7 machine. Here are the
relevant lines:
sessionInfo()
R version 2.12.0 (2010-10-15)
Platform: x86_64-pc-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
> source("http://www.bioconductor.org/biocLite.R";)
BioC_mirror = http://www.bioconductor.org
Change using chooseBioCmirror().
> biocLite("Biobase")
Using R version 2.12.0, biocinstall version 2.7.4.
Installing Bioconductor version 2.7 packages:
[1] "Biobase"
Please wait...
Error: subscript out of bounds
> traceback()
7: .readPkgDesc(lib, fields)
6: installed.packages(lib.loc = libpath, fields = c("Package", "Version"))
5: getDependencies(pkgs, dependencies, available, lib)
4: .install.winbinary(pkgs = pkgs, lib = lib, contriburl = contriburl,
method = method, available = available, destdir = destdir,
dependencies = dependencies, libs_only = libs_only, ...)
3: install.packages(pkgs = pkgs, repos = repos, ...) at biocinstall.R#205
2: biocinstall(pkgs = pkgs, groupName = groupName, ...) at biocLite.R#5
1: biocLite("Biobase")
It doesn't matter if I use biocLite, or just install.packages(), I get the same
error. I did a re-install of R, but that didn't help. I'm hoping someone else
has seen this error and might have a suggestion.
Thanks very much,
Dick
*******************************************************************************
Richard P. Beyer, Ph.D. University of Washington
Tel.:(206) 616 7378 Env. & Occ. Health Sci. , Box 354695
Fax: (206) 685 4696 4225 Roosevelt Way NE, # 100
Seattle, WA 98105-6099
http://depts.washington.edu/ceeh/members_fc_bioinfo.html
http://staff.washington.edu/~dbeyer
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