Hi Kristel --
On 08/27/2010 05:48 AM, Kristel van Eijk wrote:
> Hello everyone,
>
> I have a problem when loading the library: IlluminaHumanMethylation27k.db
>
> I installed the package from zip (from the Bioconductor website), and also
> installed all the packages it asked for. It went all succesfull:
>
> "package 'IlluminaHumanMethylation27k.db' successfully unpacked and MD5 sums
> checked"
>
> But when I am trying to load this library I get an error:
>
>> library(IlluminaHumanMethylation27k.db)
> Loading required package: AnnotationDbi
> Loading required package: Biobase
>
> Welcome to Bioconductor
>
> Vignettes contain introductory material. To view, type
> 'openVignette()'. To cite Bioconductor, see
> 'citation("Biobase")' and for packages 'citation(pkgname)'.
>
> Loading required package: org.Hs.eg.db
> Loading required package: DBI
> Error : .onLoad failed in loadNamespace() for
> 'IlluminaHumanMethylation27k.db', details:
> call: sqliteExecStatement(con, statement, bind.data)
> error: RS-DBI driver: (error in statement: near "s": syntax error)
> Error: package/namespace load failed for 'IlluminaHumanMethylation27k.db'
>
>
>
> I have tried the following things:
> - I reinstalled the packages from Bioconductor (AnnotationDbi, Biobase,
> org.Hs.eg.db and DBI)
> - restarted R
> - removed the zip file and downloaded and installed it again
>
> My version of R is 2.11.1 on a Windows XP computer.
Please ask questions about Bioconductor packages on the Bioconductor
mailing list (you must be subscribed to post).
http://bioconductor.org/help/mailing-list/
Please report sessionInfo() in your messages; a very common problem is
version mismatch between installed packages.
Please follow the instructions here to update your installed packages.
http://bioconductor.org/install/index.html#update-bioconductor-packages
And for what it's worth,
> library(IlluminaHumanMethylation27k.db)
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: org.Hs.eg.db
Loading required package: DBI
> sessionInfo()
R version 2.11.1 Patched (2010-06-03 r52215)
x86_64-unknown-linux-gnu
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] IlluminaHumanMethylation27k.db_1.2.0 org.Hs.eg.db_2.4.1
[3] RSQLite_0.9-2 DBI_0.2-5
[5] AnnotationDbi_1.10.2 Biobase_2.8.0
loaded via a namespace (and not attached):
[1] tools_2.11.1
>
Martin
>
> Thank you in advance,
>
> Kind regards,
>
> Kristel van Eijk
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
--
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109
Location: Arnold Building M1 B861
Phone: (206) 667-2793
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
