Hello Blue Ray, I have worked with DNA, but frankly I do not know what Fst, Heterozygosity and "such summary statistics" might be.
If you could explain a little, maybe even give a reference about their meaning and how to do the calculations, people who are not biologists but know R might be able to give you advice, increasing the probability of being answered :-) Tim On Mon, Aug 23, 2010 at 12:30:28PM +0200, blue jay wrote: > Hi, > > I want to analyse DNA sequence data (mtDNA) in R as in calculate Fst, > Heterozygosity and such summary statistics. Package Adagenet converts the > DNA sequence into retaining only retaining the polymorphic sites and then > calcuates Fst.. but is there any other way to do this? I mean analyse the > DNA sequence as it is.. and calculate the statistics? > > > Thanks! > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A
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______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
