Hello,
Im trying to create a heatmap with a dataset (38 x 15037) but get the
error below:
Error: protect(): protection stack overflow
Execution halted
or
Error: C stack usage is too close to the limit
Execution halted
I tried to increase the stack size by changing:
extern uintptr_t R_CStackLimit
but my systems manager said that R by default uses all the memory
available to it from the operating system. Our machine has 128G. I
also use options(expressions = 100000) but I still get the above
errors. Can anyone help? Im I trying to change the wrong thing or is
there anything else I can do?
Many thanks,
Michy
--
Michelle Simon
Bioinformatics,
MRC Mammalian Genetics Unit,
Harwell, Oxon, ox11 0rd, U.K.
E-mail: m.si...@har.mrc.ac.uk
Telephone: +44 (0)1235 841031
www: http://www.har.mrc.ac.uk/
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