Hi David,
On Sun, Jul 11, 2010 at 12:27 PM, David Ruau <dr...@stanford.edu> wrote:
> On a fresh install of R on mac os x 10.6.4 (snow leopard) RSQLite
> did not install while running biocLite()
How did you install R?
> $ R
> biocLite("RSQLite")
> Using R version 2.11.1, biocinstall version 2.6.7.
> Installing Bioconductor version 2.6 packages:
> [1] "RSQLite"
> Please wait...
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> unable to load shared library
> '/Users/druau/R/x86_64-apple-darwin10.4.0-library/2.11/RSQLite/libs/RSQLite.so':
> dlopen(/Users/druau/R/x86_64-apple-darwin10.4.0-library/2.11/RSQLite/libs/RSQLite.so,
> 6): Symbol not found: _sqlite3_backup_finish
> Referenced from:
> /Users/druau/R/x86_64-apple-darwin10.4.0-library/2.11/RSQLite/libs/RSQLite.so
> Expected in: flat namespace
> in
> /Users/druau/R/x86_64-apple-darwin10.4.0-library/2.11/RSQLite/libs/RSQLite.so
> ERROR: loading failed
> * removing ‘/Users/druau/R/x86_64-apple-darwin10.4.0-library/2.11/RSQLite’
> * restoring previous
> ‘/Users/druau/R/x86_64-apple-darwin10.4.0-library/2.11/RSQLite’
>
What version of XCode do you have? I have 3.2.1 and can build RSQLite
from source from an R that I have compiled from source. If you have
an earlier version, please try upgrading and repeating the install.
> The binary install work with install.packages("RSQLite", type='mac.binary')
> or 'mac.binary.leopard' but the package does not load properly.
>> library('RSQLite')
> Error: package 'RSQLite' was built for universal-apple-darwin9.8.0
The mac binary package is intended to work with the R binary installer
for OS X. So if you want to use it, you need to install R that way.
Hope that helps some.
+ seth
--
Seth Falcon | @sfalcon | http://userprimary.net/
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