Thanks,
Roger
-----Original Message-----
From: henrik.bengts...@gmail.com [mailto:henrik.bengts...@gmail.com] On Behalf
Of Henrik Bengtsson
Sent: Tuesday, July 06, 2010 9:24 AM
To: Bos, Roger
Cc: Uwe Ligges; Ildiko Varga; r-help
Subject: Re: [R] Linux-Windows problem
Sorry for asking the obvious, but have you confirmed that you are running the
same version of R on both systems?
/H
On Tue, Jul 6, 2010 at 2:11 PM, Bos, Roger <roger....@rothschild.com> wrote:
> Uwe,
>
> I suspect I might be having a similar problem as the R code I generate
> in Windows editor (Tinn-R) doesn't always open properly in my Linux
> editor (Rkward), but I don't know how to change the default encoding
> in either one.
>
> In R on both machines, getOption("encoding") returns "native.enc", so
> the problem is not with R, but rather at the OS or editor level. If
> you or anyone could help me out that would be appreciated.
>
> Thanks,
>
> Roger
>
> -----Original Message-----
> From: r-help-boun...@r-project.org
> [mailto:r-help-boun...@r-project.org]
> On Behalf Of Uwe Ligges
> Sent: Monday, July 05, 2010 10:04 AM
> To: Ildiko Varga
> Cc: r-help@r-project.org
> Subject: Re: [R] Linux-Windows problem
>
>
>
> On 05.07.2010 14:31, Ildiko Varga wrote:
>> Dear All,
>>
>> I faced the following problem. With the same data.frame the results
>> are different under Linux and Windows.
>> Could you help on this topic?
>
> I guess you read in the data differently since you have different
> default encodings on both platforms (e.g. latin1 vs. UTF-8) and you
> data is probably not plain ASCII.
>
> Best,
> Uwe Ligges
>
>> Thanks in advance,
>> Ildiko
>>
>> Linux:
>> > d = read.csv("CRP.csv")
>> > d$drugCode = as.numeric(d$drug)
>> > cor(d, use="pairwise.complete.obs")
>> PATIENT BL.CRP X24HR.CRP X48HR.CRP drug
>> drugCode PATIENT NA NA NA NA NA
>> NA BL.CRP NA 1.0000000 0.84324880 -0.05699590 NA
>> -0.3367147 X24HR.CRP NA 0.8432488 1.00000000 -0.06162383 NA
>> -0.3557316 X48HR.CRP NA -0.0569959 -0.06162383 1.00000000 NA
>> 0.1553356 drug NA NA NA NA NA
>> NA drugCode NA -0.3367147 -0.35573159 0.15533562 NA
>> 1.0000000 Warning message:
>> In cor(d, use = "pairwise.complete.obs") : NAs introduced by coercion
>> > str(d)
>> 'data.frame': 41 obs. of 6 variables:
>> $ PATIENT : Factor w/ 41 levels "RV13","RV14",..: 2 3 4 6 7 12 13
>> 14
>> 15 17 ...
>> $ BL.CRP : num 7.3 31.2 4.2 6.7 1.6 7.7 5.3 38.9 1 7.3 ...
>> $ X24HR.CRP: num 6.1 24.9 11.1 4.9 1 5 3.7 18 1 7.3 ...
>> $ X48HR.CRP: num 121.5 40 28.4 34.5 33.3 ...
>> $ drug : Factor w/ 2 levels "active","placebo": 1 1 1 1 1 1 1
>> 1
> 1
>> 1 ...
>> $ drugCode : num 1 1 1 1 1 1 1 1 1 1 ...
>>
>> Windows:
>> > d = read.csv("CRP.csv")
>> > d$drugCode = as.numeric(d$drug)
>> > cor(d, use="pairwise.complete.obs") Error in cor(d, use =
>> "pairwise.complete.obs") : 'x' must be numeric
>> > str(d)
>> 'data.frame': 41 obs. of 6 variables:
>> $ PATIENT : Factor w/ 41 levels "RV13","RV14",..: 2 3 4 6 7 12 13
>> 14
>> 15 17 ...
>> $ BL.CRP : num 7.3 31.2 4.2 6.7 1.6 7.7 5.3 38.9 1 7.3 ...
>> $ X24HR.CRP: num 6.1 24.9 11.1 4.9 1 5 3.7 18 1 7.3 ...
>> $ X48HR.CRP: num 121.5 40 28.4 34.5 33.3 ...
>> $ drug : Factor w/ 2 levels "active","placebo": 1 1 1 1 1 1 1
>> 1
> 1
>> 1 ...
>> $ drugCode : num 1 1 1 1 1 1 1 1 1 1 ...
>>
>> [[alternative HTML version deleted]]
>>
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>
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