Thanks Rob, Since I already had Xcode 3.0, I re-installed gfortran (from the R website, not from the .dmg) and gcc4.2.1 preview. I am afraid the outcome was the same, i.e. jags 1.0.1 not found.
Yes I do use Macports (and formery used Fink, which is still installed). What issues does this raise? On your suggestion, I made sure that both were up to date--still no success. Your offer to send me a template directory to figure things out from is very much appreciated. Yes please! Lindsay Quoting Rob Goedman <[EMAIL PROTECTED]>: > Hi Lindsay, > > Did have some difficulties as well, but got it to work using > Xcode3.0, Apple's gcc4.2preview release and gfortran 4.2.1 from > Simon's web site. This was on R-devel though, on a Mac Intel. > > Can it find the jags executable say from your home directory? Have > you tried 'make check' in the classic-bugs/vol1 or vol2 example dirs > (in the Terminal)? That would indeed confirm jags is running fine. > > For rjags, I am a bit worried about the /opt/... . Did you at some > point install software from Fink or Darwin ports? Until I installed > the above newer toolset, I had never been able to get rjags to work. > > Of course you don't really need rjags, only coda. I have also > installed the package 'arm' and the packages arm depends on (Matrix, > lattice, lme4, R2WinBugs). If it would help I can send you a > 'template' dir for the line example that does not use rjags. > > A dependency I ran into was coda v 13.1, as of a couple of days ago > not available as a binary package, > but available as a source package on CRAN. > > Rob > > On Dec 30, 2007, at 8:27 AM, Lindsay Stirton wrote: > >> Greetings, >> >> I wonder if anyone can offer any help or advice--even direction to an >> appropriate source of advice. I am trying to install rjags 1.0.1 on >> Mac OS X >> 10.5 (see http://www-fis.iarc.fr/~martyn/software/jags/). I have >> R.app 2.6.1 >> installed. >> >> JAGS 1.0.1 is apparently successfully installed. I (think I) know >> this because >> when I type 'jags' into Terminal, I get the following: >> >> Macintosh:Desktop ljs$ jags >> Welcome to JAGS 1.0.1 on Thu Dec 27 20:56:09 2007 >> JAGS is free software and comes with ABSOLUTELY NO WARRANTY >> Loading module: basemod >> Loading module: bugs >> . >> >> However, when I try to install rjags, I get the following problem. >> >> Macintosh:Desktop ljs$ sudo R CMD INSTALL rjags_1.0.1-1.tar.gz >> Password: >> * Installing to library '/Library/Frameworks/R.framework/Resources/ library' >> * Installing *source* package 'rjags' ... >> checking for pkg-config... /opt/local/bin/pkg-config >> checking pkg-config is at least version 0.9.0... yes >> checking for JAGS... configure: error: Package requirements (jags = >> 1.0.1) were >> not met: >> >> No package 'jags' found >> >> Consider adjusting the PKG_CONFIG_PATH environment variable if you >> installed software in a non-standard prefix. >> >> ERROR: configuration failed for package 'rjags' >> ** Removing '/Library/Frameworks/R.framework/Resources/library/rjags' >> >> I am really not sure what the problem is. I have (I think) set the proper >> environment variables correctly. See below: >> >> Macintosh:Desktop ljs$ which jags >> /usr/local/bin/jags >> Macintosh:Desktop ljs$ echo $PKG_CONFIG_PATH >> /usr/local/bin >> >> I should say that I had many other problems >> along the way--gfortran not originally installed properly, R CMD INSTALL >> couldn't find pkg-config. However, the above description shows the problems >> remaining even after I have done a little homework. >> >> Best wishes, >> >> Lindsay Stirton >> >> ______________________________________________ >> R-help@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. > > ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
