Feifei -- Ask on the Bioconductor mailing list http://bioconductor.org. Update your Bioc packages following instructions on the 'install - how to' page linked from the main bioconductor page -- your affy is out of date.
Best, Martin Feifei <[EMAIL PROTECTED]> writes: > Hi, > > Can anyone help me of the affylmGUI package, I can't get it work and > searched for google but can't find any proper solutions. > > I get the error information each time when I load my cells files, which > are shown in the following links. > ------------- > http://clarezoe.googlepages.com/1.png > http://clarezoe.googlepages.com/2.png > http://clarezoe.googlepages.com/3.png > ------------- > > Errors also show in the terminal as below, > ------------- > > Error: no function to return from, jumping to top level > In addition: Warning messages: > 1: read.phenoData is deprecated, use read.AnnotatedDataFrame instead > 2: The phenoData class is deprecated, use AnnotatedDataFrame (with > ExpressionSet) instead > Error in exprs(RawAffyData) : > no function to return from, jumping to top level > -------------- > > I'm running R version 2.6.1 under Linux Ubuntu 7.10 > > -------------- > > My sessionInfo is shown below, > > -------------- > > sessionInfo() > R version 2.6.1 (2007-11-26) > i486-pc-linux-gnu > > locale: > > LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C > > attached base packages: > [1] tools tcltk stats graphics grDevices utils > datasets > [8] methods base > > other attached packages: > [1] affylmGUI_1.12.0 affy_1.12.2 affyio_1.6.1 Biobase_1.16.1 > [5] limma_2.12.0 > > loaded via a namespace (and not attached): > [1] rcompgen_0.1-17 > ---------------- > > Can anyone help me with that? I really need it to work ASAP. > > Thanks a lot! > > Sincerely > Feifei > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
