On 11/03/2024 11:43 a.m., Therneau, Terry M., Ph.D. via R-devel wrote:
Is there a way to include the compiled version of a vignette in the doc
directory but mark
it to NOT be rerun by CRAN? I think I remember that this is possible, but
have forgotton
how. (It might even be a false memory.)
You could use a method similar to the testthat::skip_on_cran() approach.
Have the long running chunks only run conditional on having a special
environment variable present. This would be a little easier with knitr
than with Sweave, since there you can use expressions for the chunk
options, but you could always write the code something like this:
if (Sys.getenv("RUN_SLOW_CHUNKS", 0)) {
... the slow code goes here ...
} else
cat("This chunk takes several hours to compute. If you want to run
it, set the environment variable RUN_SLOW_CHUNKS to 1.\n")
Duncan Murdoch
Terry T.
Background: Beth Atkinson and I are splitting out many of the vignettes from
the survival
package into a separate package survivalVignettes. There are a few reasons
1. Some vignettes use packages outside of the base + recommended set;
psueodovalues for
instance are normally used as input to a subsequent GEE model. Since
survival is itself
a recommended package, it can't legally host the pseudo.Rnw vignette.
2. The set of vignettes for survival is large, and likely to get larger.
It makes
sense to slim down the size of the package itself.
3. It allows us to use Rmd. (Again, survival can't use anything outside of
base +
recommended).
4. We have a couple of 'optional' vignettes that talk about edge cases,
useful to some
people but not worth the size cost of cluttering up the main package.
The current submission fails due to one vignette in group 4 which takes a
looong time to
run. This vignette in particular is talking about compute time, and
illustrates a cases
where an O(n^2) case arises. As sentence that warns the use "of you do this
it will take
hours to run" is a perfect case for a pdf that should not be recreated by R CMD
check.
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