Thanks Prof. Brian, Current I’m using oneapi 2022.1.0 in particular ifort 2021.6.0 20220226 (not ifx).
Thanks for the clarification. Regards, Giuseppe. ——————————————————————————————————————— Giuseppe Calò Fondazione CMCC Centro Euro-Mediterraneo sui Cambiamenti Climatici presso Complesso Ecotekne Università del Salento - Strada Prov.le Lecce - Monteroni 73100 Lecce IT http://www.cmcc.it https://goo.gl/maps/wtahPDbNVen mobile: (+39) 3208190020 email: giuseppe.c...@cmcc.it Le informazioni contenute in questo messaggio di posta elettronica e negli allegati se presenti sono riservate e confidenziali: ne è vietata la diffusione in qualsiasi modo o forma (GDPR 2016/679). Qualora lei non fosse il destinatario del messaggio, la invito a non diffonderlo e ad eliminarlo dandone gentilmente comunicazione al mittente. The information included in this e-mail and any attachments are confidential and may also be privileged (GDPR 2016/679). If you are not the correct recipient, you are kindly requested to notify the sender immediately, to cancel it and not disclose the contents to any other person. > On 18 Jul 2023, at 11:18, Prof Brian Ripley <rip...@stats.ox.ac.uk> wrote: > > Note that 'intel 2022' is a bit vague. The current version is 2023.1.0, and > that has both the 'classic' (icc/icpc/ifort which it seems you used) and new > (icx/ixpx/ifx) compilers -- the former are said to be going to be > discontinued later this year. R did not know about ifx so did not build with > the new set. > > The parts of the manual Tomas referred to were about the old compilers: the > manual has now been re-written in R-devel and R-patched to major on the newer > ones. We have patched the code to work with both old and new compilers, > pending a more thorough investigation of matherr. > > In our experiments Intel Fortran only worked in conjunction with oneAPI MKL > -- see the manual. It seems ifx is still under development, so it should pay > to use only the latest versions. > > This is the first report on Intel compilers since 2015, so they are rather > low priority for the R developers. > > > On 21/06/2023 08:10, Tomas Kalibera wrote: >> On 6/20/23 18:47, Giuseppe Calò wrote: >>> Hi all, >>> I have the issue: >>> >>> icc -std=c99 -std=gnu11 -I../../src/extra -I../../src/extra/xdr -I. >>> -I../../src/include -I../../src/include -I/usr/local/include >>> -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O3 -wd188 -ip -mp >>> -c eval.c -o eval.o >>> arithmetic.c(66): warning #274: declaration is not visible outside of >>> function >>> int matherr(struct exception *exc) >>> ^ >>> >>> arithmetic.c(68): error: pointer to incomplete class type is not allowed >>> switch (exc->type) { >>> ^ >>> >>> arithmetic.c(69): error: identifier "DOMAIN" is undefined >>> case DOMAIN: >>> ^ >>> >>> arithmetic.c(70): error: identifier "SING" is undefined >>> case SING: >>> ^ >>> >>> arithmetic.c(73): error: identifier "OVERFLOW" is undefined >>> case OVERFLOW: >>> ^ >>> >>> arithmetic.c(76): error: identifier "UNDERFLOW" is undefined >>> case UNDERFLOW: >>> ^ >>> >>> arithmetic.c(77): error: pointer to incomplete class type is not allowed >>> exc->retval = 0.0; >>> >>> icc -std=c99 -std=gnu11 -I../../src/extra -I../../src/extra/xdr -I. >>> -I../../src/include -I../../src/include -I/usr/local/include >>> -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O3 -wd188 -ip -mp >>> -c flexiblas.c -o flexiblas.o >>> icc: command line remark #10148: option '-mp' not supported >>> compilation aborted for arithmetic.c (code 2) >>> make[3]: *** [../../Makeconf:129: arithmetic.o] Error 2 >>> make[3]: *** Waiting for unfinished jobs.... >>> icc: command line remark #10148: option '-mp' not supported >>> make[3]: Leaving directory '/opt/sources/R/R-4.3.1-intel21/src/main' >>> make[2]: *** [Makefile:140: R] Error 2 >>> make[2]: Leaving directory '/opt/sources/R/R-4.3.1-intel21/src/main' >>> make[1]: *** [Makefile:28: R] Error 1 >>> make[1]: Leaving directory '/opt/sources/R/R-4.3.1-intel21/src' >>> make: *** [Makefile:62: R] Error 1 >>> >>> with oneapi-2022.1.0/compiler-rt/2022.1.0; oneapi-2022.1.0/mkl/2022.1.0 >>> while building R-4.3.1 on redhat 8.4 glibc2.28-189 >>> >>> I followed a workaround proposed: >>> https://community.intel.com/t5/Intel-C-Compiler/Error-when-compiling-R-from-source-code-ubuntu-18-04/m-p/1176401/thread-id/36575 >>> >>> <https://community.intel.com/t5/Intel-C-Compiler/Error-when-compiling-R-from-source-code-ubuntu-18-04/m-p/1176401/thread-id/36575> >>> >>> Deactivate HAVE_MATHERR macro in src/include/config.h >> Hi Giuseppe, >> thanks for the report. Undefining HAVE_MATHERR seems a valid work-around to >> me, based on reading the thread above and the sources. >> We could improve this in R, if keeping this code, at least improve the >> configure check so that it also tests for the presence of the macros. >>> Using this workaroud I get R with: >>> >>> BLAS/LAPACK: >>> /opt/intel/oneapi_2022.2.0/mkl/2022.1.0/lib/intel64/libmkl_intel_lp64.so.2; >>> LAPACK version 3.9.0 >>> >>> is correct? >>> >>> Is these a way to avoid arithmetic issue? >>> >>> My configure is: >>> >>> module load intel-2021.6.0/2021.6.0 oneapi-2022.1.0/mkl >>> MKL="-L${MKLROOT}/lib/intel64 -lmkl_gf_lp64 -lmkl_core -lmkl_gnu_thread -dl >>> -fopenmp" >>> export CC="icc -std=c99" >>> export CFLAGS="-g -O3 -wd188 -ip -mp" >>> export FC=ifort >>> export FLAGS="-g -O3 -mp" >>> export CXX=icpc >>> export CXXFLAGS="-g -O3 -mp" >>> SHLIB_CXXLD=icpc >>> export MKL_INTERFACE_LAYER=GNU,LP64 >>> export MKL_THREADING_LAYER=GNU >>> ./configure --prefix=/opt/intel-2021.6.0/R/4.3.1 --with-blas="$MKL" >>> --with-lapack --enable-memory-profiling --enable-BLAS-shlib >>> --enable-R-shlib --enable-R-static-lib --with-pcre2 >> AFAIK, neither icc nor MKL is regularly tested with R/CRAN packages, so the >> risk of running into some issues is somewhat higher than for say GCC and the >> reference BLAS/LAPACK. >> Some hints on using icc and MKL can be found in the R Admin manual, >> https://cran.r-project.org/doc/manuals/r-release/R-admin.html. Unless you >> have done that already, you might want to check your configuration against >> those, I didn't spot any obvious issue. If you find any other problem, >> please report, so that it could be fixed or the hints updated. >> Thanks, >> Tomas >>> >>> Thanks a lot, >>> Giuseppe. >>> >>> ——————————————————————————————————————— >>> Giuseppe Calò >>> >>> Fondazione CMCC >>> Centro Euro-Mediterraneo sui Cambiamenti Climatici presso Complesso Ecotekne >>> Università del Salento - Strada Prov.le Lecce - Monteroni 73100 Lecce IT >>> http://www.cmcc.it <http://www.cmcc.it/> >>> https://goo.gl/maps/wtahPDbNVen >>> >>> mobile: (+39) 3208190020 >>> email: giuseppe.c...@cmcc.it >>> >>> Le informazioni contenute in questo messaggio di posta elettronica e negli >>> allegati se presenti sono riservate e confidenziali: ne è vietata la >>> diffusione in qualsiasi modo o forma (GDPR 2016/679). >>> Qualora lei non fosse il destinatario del messaggio, la invito a non >>> diffonderlo e ad eliminarlo dandone gentilmente comunicazione al mittente. >>> >>> The information included in this e-mail and any attachments are >>> confidential and may also be privileged (GDPR 2016/679). >>> If you are not the correct recipient, you are kindly requested to notify >>> the sender immediately, to cancel it and not disclose the contents to any >>> other person. >>> >>> >>> >>> >>> >>> [[alternative HTML version deleted]] >>> >>> ______________________________________________ >>> R-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/r-devel >> ______________________________________________ >> R-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-devel > > -- > Brian D. Ripley, rip...@stats.ox.ac.uk > Emeritus Professor of Applied Statistics, University of Oxford > [[alternative HTML version deleted]] ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
