I'm running "R CMD check" for 600+ of the packages that depend on survival, and
at the end
look for
grep Status *.Rcheck/00check.log | grep ERROR
to find any that failed. But by accident I just looked at the log for the
Greg package,
which finishes with the lines found below. Is the final note of WARNING rather
than ERROR
on purpose, or an error? If the former, will adding a search for "Quitting
from" suffice?
By the way, the failure shown was an (uncaught) bug in cox.zph wrt putting
dimnames on one
of the result matrices.
Terry T
----------------------
--- re-building ‘timeSplitter.Rmd’ using rmarkdown
Loading required package: forestplot
Loading required package: grid
Loading required package: checkmate
Loading required package: Gmisc
Loading required package: Rcpp
Loading required package: htmlTable
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 408-412 (timeSplitter.Rmd)
Error: processing vignette 'timeSplitter.Rmd' failed with diagnostics:
length of 'dimnames' [1] not equal to array extent
--- failed re-building ‘timeSplitter.Rmd’
SUMMARY: processing the following file failed:
‘timeSplitter.Rmd’
Error: Vignette re-building failed.
Execution halted
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
‘/home/therneau/research/surv/Hg/survsubmit/xtest/Greg.Rcheck/00check.log’
for details.
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