If we started over, I'd try to avoid this sort of complexity, but "ANY"
truncation has been happening since at least 2003.
> matchSignature(c("numeric", "ANY"), foo)
x
"numeric"
So I'm not sure we want to mess with it.
Michael
On Thu, Mar 21, 2019 at 8:14 PM Pages, Herve <hpa...@fredhutch.org> wrote:
> Hi Michael,
>
> Thanks for looking into this. I suspect that truncation of ANY suffixes
> from method signatures is also the culprit behind the sudden breakage of
> aliases of the form \alias{foo,numeric-method} when a method without the
> ANY suffix in its signature gets added to the ecosystem. See my post about
> this to the Bioc-devel mailing list a couple of months ago:
> https://stat.ethz.ch/pipermail/bioc-devel/2019-January/014603.html
>
> So overall isn't this truncation more trouble than it's worth?
>
> H.
> On 3/19/19 10:12, Michael Lawrence wrote:
>
> This is due to the intentional truncation of ANY suffixes from method
> signatures. I've hacked selectMethod() to be robust to that and will commit
> soon. Thanks for the report.
>
> Michael
>
> On Thu, Mar 14, 2019 at 9:32 AM Pages, Herve <hpa...@fredhutch.org> wrote:
>
>> Here is an example:
>>
>> setGeneric("foo", function(x, y) standardGeneric("foo"))
>>
>> setMethod("foo", c("numeric", "ANY"),
>> function(x, y) cat("I'm the foo#numeric#ANY method\n")
>> )
>>
>>
>> Dispatch works as expected but selectMethod() fails to find the method:
>>
>>
>> > foo(1, TRUE)
>> I'm the foo#numeric#ANY method
>>
>> > selectMethod("foo", c("numeric", "logical"))
>> Error in selectMethod("foo", c("numeric", "logical")) :
>> no method found for signature numeric, logical
>>
>> Adding an arbitrary method that doesn't have ANY in the signature "fixes"
>> selectMethod():
>>
>> setMethod("foo", c("complex", "integer"),
>> function(x, y) cat("I'm the foo#complex#integer method\n")
>> )
>>
>> Then:
>>
>> > selectMethod("foo", c("numeric", "logical"))
>> Method Definition:
>>
>> function (x, y)
>> cat("I'm the foo#numeric#ANY method\n")
>>
>> Signatures:
>> x y
>> target "numeric" "logical"
>> defined "numeric" "ANY"
>>
>>
>> Thanks,
>>
>> H.
>>
>>
>> --
>> Hervé Pagès
>>
>> Program in Computational Biology
>> Division of Public Health Sciences
>> Fred Hutchinson Cancer Research Center
>> 1100 Fairview Ave. N, M1-B514
>> P.O. Box 19024
>> Seattle, WA 98109-1024
>>
>> E-mail: hpa...@fredhutch.org<mailto:hpa...@fredhutch.org>
>> Phone: (206) 667-5791
>> Fax: (206) 667-1319
>>
>>
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>>
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>>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpa...@fredhutch.org
> Phone: (206) 667-5791
> Fax: (206) 667-1319
>
>
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