On 3/1/19 9:43 AM, robin hankin wrote:
Still something wrong. I've uncommented the deb-src lines in
sources.list as you suggested (and I thought it couldn't hurt to try
--allow-unauthenticated as well) and:
So you can try commenting again the sources that are failing, R should
be in universe (and --allow-unauthenticated should not be necessary for
that).
If you still have problems please take it offline, these are already
Ubuntu/Debain topics, not R (you can also try ubuntu-users). Some
documentation is here:
https://help.ubuntu.com/community/Repositories/CommandLine
Best
Tomas
root@limpet:/etc/apt# apt-get update --allow-unauthenticated
Hit:1 http://nz.archive.ubuntu.com/ubuntu bionic InRelease
Hit:2 http://repo.steampowered.com/steam precise InRelease
Hit:3 http://nz.archive.ubuntu.com/ubuntu bionic-updates InRelease
Hit:4 http://nz.archive.ubuntu.com/ubuntu bionic-backports InRelease
Ign:5 http://cran.rstudio.com/bin/linux/ubuntu bionic/ InRelease
Err:6 http://cran.rstudio.com/bin/linux/ubuntu bionic/ Release
404 Not Found [IP: 13.35.146.80 80]
Hit:7 https://cloud.r-project.org/bin/linux/ubuntu cosmic-cran35/
InRelease
Hit:8 http://ppa.launchpad.net/edd/misc/ubuntu bionic InRelease
Hit:9 http://security.ubuntu.com/ubuntu bionic-security InRelease
Hit:10 http://ppa.launchpad.net/marutter/c2d4u/ubuntu bionic InRelease
Ign:11 http://ppa.launchpad.net/marutter/rdev/ubuntu bionic InRelease
Hit:12 http://ppa.launchpad.net/marutter/rrutter3.5/ubuntu bionic InRelease
Hit:13 http://ppa.launchpad.net/teejee2008/ppa/ubuntu bionic InRelease
Err:14 http://ppa.launchpad.net/marutter/rdev/ubuntu bionic Release
404 Not Found [IP: 91.189.95.83 80]
Ign:15 http://dl.google.com/linux/chrome/deb stable InRelease
Hit:16 http://dl.google.com/linux/chrome/deb stable Release
Reading package lists... Done
E: The repository 'http://cran.rstudio.com/bin/linux/ubuntu bionic/
Release' does not have a Release file.
N: Updating from such a repository can't be done securely, and is
therefore disabled by default.
N: See apt-secure(8) manpage for repository creation and user
configuration details.
E: The repository 'http://ppa.launchpad.net/marutter/rdev/ubuntu
bionic Release' does not have a Release file.
N: Updating from such a repository can't be done securely, and is
therefore disabled by default.
N: See apt-secure(8) manpage for repository creation and user
configuration details.
root@limpet:/etc/apt#
hankin.ro...@gmail.com
hankin.ro...@gmail.com
On Fri, Mar 1, 2019 at 9:19 PM Tomas Kalibera <tomas.kalib...@gmail.com> wrote:
On 3/1/19 9:03 AM, robin hankin wrote:
OK thanks Tomas, but I get
OK~ sudo apt-get build-dep r-base
Reading package lists... Done
E: Unable to find a source package for r-base
OK~
It seems you need to enable source code repositories on your system
(and then run apt-get update).
You can enable them in /etc/apt/sources.list, uncomment all lines
starting with deb-src.
Best
Tomas
hankin.ro...@gmail.com
On Fri, Mar 1, 2019 at 8:47 PM Tomas Kalibera <tomas.kalib...@gmail.com> wrote:
On 3/1/19 7:10 AM, robin hankin wrote:
thanks for this guys.
I only compiled pcre myself as a last resort, because of the
./configure failure. But AFAICS apt-get reports correct
installation:
OK~/Downloads/R-devel sudo apt-get install r-base-dev
Reading package lists... Done
Building dependency tree
Reading state information... Done
r-base-dev is already the newest version (3.5.2-1cosmic).
0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
OK~/Downloads/R-devel
I would just run this
apt-get build-dep r-base
that will install all packages needed to _build_ r-base, so including PCRE.
Best
Tomas
config.log gives me:
configure:42208: $? = 0
configure:42208: result: yes
configure:42208: checking for pcre.h
configure:42208: result: yes
configure:42208: checking pcre/pcre.h usability
configure:42208: gcc -c -g -O2 -I/usr/local/include conftest.c >&5
conftest.c:289:10: fatal error: pcre/pcre.h: No such file or directory
#include <pcre/pcre.h>
^~~~~~~~~~~~~
compilation terminated.
configure:42208: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "3
and
HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <pcre/pcre.h>
configure:42208: result: no
configure:42208: checking pcre/pcre.h presence
configure:42208: gcc -E -I/usr/local/include conftest.c
conftest.c:256:10: fatal error: pcre/pcre.h: No such file or directory
#include <pcre/pcre.h>
^~~~~~~~~~~~~
compilation terminated.
configure:42208: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "3.6.0"
| #define PACKAGE_STRING "R 3.6.0"
| #define PACKAGE_BUGREPOR
hankin.ro...@gmail.com
On Mon, Feb 25, 2019 at 9:39 PM Tomas Kalibera <tomas.kalib...@gmail.com> wrote:
On 2/25/19 6:25 AM, robin hankin wrote:
Hi there, ubuntu 18.04.2, trying to compile R-devel 3.6.0, svn 76155.
I am having difficulty compiling R. I think I have pcre installed correctly:
You can use
apt-get build-dep r-base
to install binary Ubuntu packages needed to build R from source,
including PCRE, so there should be no need to compile PCRE from source.
If you need for some special reason to compile PCRE from source, please
see R Admin Manual, section A.1 on how to configure PCRE. The manual
also says how to set compilation flags for R to look for headers in
other directories. Sometimes it helps to search the config.log when
configure fails. If still in trouble, please report how you built PCRE
and how you told R where to find it, and the relevant part of
config.log, to maximize chances people could offer useful advice.
Best,
Tomas
OK~/Downloads/R-devel pcretest -C
PCRE version 8.41 2017-07-05
Compiled with
8-bit support
UTF-8 support
No Unicode properties support
No just-in-time compiler support
Newline sequence is LF
\R matches all Unicode newlines
Internal link size = 2
POSIX malloc threshold = 10
Parentheses nest limit = 250
Default match limit = 10000000
Default recursion depth limit = 10000000
Match recursion uses stack
OK~/Downloads/R-devel
But ./configure gives me this:
[snip]
checking for pcre.h... yes
checking pcre/pcre.h usability... no
checking pcre/pcre.h presence... no
checking for pcre/pcre.h... no
checking if PCRE version >= 8.20, < 10.0 and has UTF-8 support... no
checking whether PCRE support suffices... configure: error: pcre >=
8.20 library and headers are required
OK~/Downloads/R-devel
can anyone advise?
hankin.ro...@gmail.com
______________________________________________
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
______________________________________________
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
