What OS are you on? On Ubuntu 17.10 with R 3.4.3 all seems well (see below for your example, I just added a setwd()).
[ That said, I long held a (apparently minority) view that csv is for all intends and purposes a less-than-ideal format. If you have that much data, you do generally not want to serialize it back and forth as that is slow, and may drop precision. The rds format is great for R alone; we now have C code to read it from other apps (in the librdata repo by Evan Miller). Different portable serializations work too (protocol buffer, msgpack, ...), there are databases and on and on... ] Dirk R> df <- data.frame(replicate(100, runif(1000000, 0,1))) R> setwd("/tmp") R> write.csv(df, "temp.csv") R> system('tail -n1 temp.csv') "1000000",0.11496100993827,0.740764639340341,0.519190795486793,0.736045523779467,0.537115448853001,0.769496953347698,0.102257401449606,0.437617724528536,0.173321532085538,0.351960731903091,0.397348914295435,0.496789071243256,0.463006566744298,0.573105450021103,0.575196429155767,0.821617329493165,0.112913676071912,0.187580146361142,0.121353451395407,0.576333721866831,0.00763232703320682,0.468676633667201,0.451408475637436,0.0172415724955499,0.946199159137905,0.439950440311804,0.109224532730877,0.657066411571577,0.0524766123853624,0.54859598656185,0.94473168021068,0.500153199071065,0.636756601976231,0.221365773351863,0.620196332456544,0.559639401268214,0.198483835440129,0.397874651942402,0.710652963491157,0.317212327616289,0.239299293374643,0.0606942125596106,0.165786643279716,0.667431530542672,0.436631754040718,0.812185280025005,0.374252707697451,0.421187321422622,0.730321826180443,0.904493971262127,0.399387824581936,0.650714065413922,0.594219180056825,0.147960299625993,0.941945064114407,0.357223904458806,0.275038427906111,0.191008436959237,0.957893384154886,0.211530723143369,0.680650093592703,0.503884038887918,0.754094189498574,0.74776051659137,0.673691919771954,0.236221367260441,0.825558929471299,0.21071959589608,0.246618688805029,0.686810691142455,0.0247942050918937,0.572868114337325,0.494058627169579,0.684360746992752,0.0139967589639127,0.626861660508439,0.417218193877488,0.410173830809072,0.390906651504338,0.477168896235526,0.382211019750684,0.597674581920728,0.198329919017851,0.0684413285925984,0.450342149706557,0.133007253985852,0.755873151356354,0.372862737858668,0.762442974606529,0.582133987685665,0.692048883531243,0.259269661735743,0.147847984684631,0.635266482364386,0.320955650880933,0.00151186063885689,0.446474697208032,0.0673662247136235,0.791947861900553,0.0973296447191387 R> system('head -n2 temp.csv') "","X1","X2","X3","X4","X5","X6","X7","X8","X9","X10","X11","X12","X13","X14","X15","X16","X17","X18","X19","X20","X21","X22","X23","X24","X25","X26","X27","X28","X29","X30","X31","X32","X33","X34","X35","X36","X37","X38","X39","X40","X41","X42","X43","X44","X45","X46","X47","X48","X49","X50","X51","X52","X53","X54","X55","X56","X57","X58","X59","X60","X61","X62","X63","X64","X65","X66","X67","X68","X69","X70","X71","X72","X73","X74","X75","X76","X77","X78","X79","X80","X81","X82","X83","X84","X85","X86","X87","X88","X89","X90","X91","X92","X93","X94","X95","X96","X97","X98","X99","X100" "1",0.995067856274545,0.0237177284434438,0.839840568602085,0.99880409357138,0.455015312181786,0.967688028467819,0.191194181796163,0.903533136472106,0.570170691236854,0.86230118968524,0.23530788696371,0.30707904486917,0.256274404237047,0.369592409580946,0.989929250674322,0.50812312704511,0.806819133926183,0.536566868191585,0.0863138805143535,0.294523851014674,0.676951135974377,0.195627561537549,0.261776751372963,0.383222601376474,0.578275503357872,0.79082652577199,0.19860127940774,0.0204593606758863,0.659964868798852,0.42379029514268,0.69516694964841,0.0594558380544186,0.124592808773741,0.289328144863248,0.524508266709745,0.84306427766569,0.317027662880719,0.273440480465069,0.111866136547178,0.217484838794917,0.354757327819243,0.973936082562432,0.673076402861625,0.300948366522789,0.219195493729785,0.912278874544427,0.276768424082547,0.959344451315701,0.500720858341083,0.431024399353191,0.814444699790329,0.0738761406391859,0.600137831410393,0.639816240407526,0.405302967177704,0.941259450744838,0.190415472723544,0.0382565588224679,0.486769351176918,0.127647049957886,0.558708024444059,0.686994878342375,0.176803215174004,0.794697789475322,0.59406904829666,0.0897431457415223,0.196549082174897,0.0750515828840435,0.736311340238899,0.00494878669269383,0.383522965712473,0.960385771468282,0.101023471681401,0.209177070530131,0.798869548132643,0.147874428424984,0.187238642480224,0.148522146046162,0.32379064662382,0.620601811446249,0.201180462958291,0.179565666476265,0.466121524339542,0.245493365218863,0.980698639061302,0.342919659335166,0.387780519668013,0.393966492731124,0.148554262006655,0.521724705817178,0.722740866011009,0.105151653522626,0.461909410310909,0.905382365221158,0.0736293855588883,0.636923864483833,0.540197744267061,0.425208077067509,0.666353516280651,0.584139186656103 R> -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel