On 11 May 2017 at 10:17, Erwan Le Pennec wrote: | Dear all, | | I've stumbled a similar issue with the package cluster when | compiling the 3.4.0 version with the settings of Fedora RPM specs. | Compiling R with the default setting of configure yields a version that | works for cluster... and nlme. | | I did not find the exact option that was the cause of this issue | but I'm willing to help. | | Erwan | | PS: This is the reason why R is still at version 3.3.3 on the Fedora | distribution. | | On 10/05/17 22:59, Langbehn, Douglas wrote: | > lme() and gls() models from the nlme package are all crashing with R.3.4.0. Identical code ran correctly, without error in R 3.3.3 and earlier versions. The behavior is easily demonstrated using one of the examples form the lme() help file, along with two simple variants. I have commented the errors generated by these calls, as well as the lines of code generating them, in the code example below. | > | > As of today, this bug had not been reported on the R Bugzilla page. I could not submit this report directly to the page because I am not a member, and , as explained in the "Reporting Bugs" link from the R home page, membership has now been closed due to spamming problems.. | > | > ############################################################################ | > library(nlme) | > #Using version 3.1-131 | > #Windows 7 64-bit operating system | > | > fm2 <- lme(distance ~ age + Sex, data = Orthodont, random = ~ 1) | > | > # Error in array(c(rep(1, p), .C(inner_perc_table, as.double(X), as.integer(unlist(grps)), : | > # object 'inner_perc_table' not found
That is a known issue with R 3.4.0 -- see NEWS. Packages using .C and .Fortran _must_ be recompiled for R 3.4.0. If and when you do, the example will work again. Dirk -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
