Dirk,
ive changed the subject given the nature of the present debugging.  Im aware i 
can extend extras from download.file to install.packages however
im curious to know why libcurl in the R invocation does not honor the CA bundle 
on my system.

how would I pass a CA bundle to install.packages?  the function has numerous 
arguments before the extras are taken.

John Roman
Linux System Administrator
RAND Corporation
joro...@rand.org
X7302

________________________________________
From: Dirk Eddelbuettel [dirk.eddelbuet...@gmail.com] on behalf of Dirk 
Eddelbuettel [e...@debian.org]
Sent: Monday, March 27, 2017 11:33 AM
To: Roman, John
Cc: Dirk Eddelbuettel; R-devel@r-project.org
Subject: RE: [Rd] R fails to read repo index on NGINX

On 27 March 2017 at 18:27, Roman, John wrote:
| Thank you for your elaboration.  This issue is related to curl trusting a CA 
cert as its called by R.
| curl called from bash recognizes the system cert bundle for CA's, curl called 
from R does not.
|
| may I know how to trust the system certificate bundle from within R?

See 'help(download.file)' -- it's a little hidden but you can just make the
external curl (which, as you say, works in your particular circumstances) the
default for remote file access from R too.

Next time please try to be a little more specific with your questions and
their subject line.  Methinks nothing here has anything to do with the httpd
server you employ.

Dirk

--
http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org


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