On 2015-12-18 02:29, Simon Urbanek wrote:
Michael,
I got access to PDP AIX so I can try to replicate your problem. Can you,
please, share exactly your setup - AIX version and well as how exactly you
installed the compilers (=where from)? I can then try to replicate it. AFAICS
there is no official binary for gfortran nor gcc 4.7 so it must be some 3rd
party - which could also be a problem.
Thanks,
Simon
I built gcc and gfortran myself. Available via
http://download.aixtools.net/test/aixtools.obj.gcc.4.7.4.0.aix537.I
(still in the test directory because the fileset name should be
aixtools.gnu.gcc) - other filesets and instructions are available at:
http://download.aixtools.net/gnu/gcc/
Note, especially, I was not smart enough - then - to automatically run
the mkheaders command (full command is either
/opt/libexec/gcc/powerpc-ibm-aix5.3.7.0/4.7.4/install-tools/mkheaders or
/opt/libexec/gcc/powerpc-ibm-aix5.3.0.0/4.7.4/install-tools/mkheaders
depending on the version of libtool I had installed when packaging (the latest
also looks at the TL level, hence 5.3.7.0 rather that 5.3.0.0)
Only looking at the rte (runtime) filesets - this is what I have added:
All are available via http:://www.aixtools.net (wiki interface) or
http://download.aixtools.net (self-service).
The AIXTOOLBOX approach uses rpm for packaging - which I did not
understand when I got started several years back. And I am not switching
to rpm - following in the footsteps of Perzl because:
a) Michael Perzl does an excellent job of keeping the AIXTOOLBOX where
it should be - no need to replicate that
b) I hate the RPM dependency nightmare (e.g., installing three rpm -dev
packages just to get 5 include files)
c) The RPM.spec files often (well occaisionally, but once is once too
many for me) overwrite AIX/IBM installp files - so updates of one damage
the other
d) RPM and NIM did not work as well as NIM and INSTALLP
Almost end of soapbox --- In AIX 5.2 IBM included a tool called
mkinstallp. I have a tool around that - that I call buildaix - that
largely automates packaging OSS/FOSS, especially when the packaging
follows GNU build guidelines.
root@x065:[/data/prj/cran/R-3.2.3/src/extra/tre] aixtools | grep rte <
aixtools.32.R.rte 3.1.3.0 C F 1548 1130 1457
aixtools.bison.rte 3.0.4.0 C F bison 1504 0125 1445
aixtools.buildaix.rte 2.0.3.1 C F 1540 1007 2004
aixtools.bzip2.rte 1.0.6.0 C F 1543 1030 1351
aixtools.curl.rte 7.45.0.0 C F 1544 1106 1841
aixtools.gmp.rte 5.0.5.0 C F gmp version 5.0.5
for powerpc
aixtools.gnu.bash.rte 4.3.42.0 C F 1537 0913 1505
aixtools.gnu.gettext.rte 0.19.5.0 C F 1531 0807 0000
aixtools.gnu.gzip.rte 1.6.0.0 C F 1550 1216 1405
aixtools.gnu.gzip.rte.64 1.6.0.0 C F 1550 1216 1417
aixtools.gnu.m4.rte 1.4.17.0 C F 1523 0613 1221
aixtools.gnu.make.rte 4.1.0.0 C F 1523 0613 1158
aixtools.libiconv.rte 1.14.0.0 C F libiconv 1447 1127 1728
aixtools.libjpeg.rte 6.2.0.0 C F libjpeg version
6.2.0 for
aixtools.libpng.rte 1.5.12.0 C F libpng version
1.5.12 for
aixtools.mpc.rte 1.0.2.0 C F mpc 2014.Oct.31
15.44 CUT
aixtools.mpfr.rte 2.4.2.0 C F mpfr 2014.Oct.31
15.19 CUT
aixtools.obj.gcc.rte 4.7.4.0 C F 1515 0416 2134
aixtools.pcre.rte 8.37.0.0 C F 1544 1106 1445
aixtools.pkgconfig.gcc.rte
aixtools.tiff.rte 4.0.6.0 C F 1542 1024 2144
aixtools.xz.rte 5.0.8.0 C F 1522 0602 0809
aixtools.zlib.rte 1.2.8.1 C F zlib 1505 0203 1627
In closing, I made the mistake of thinking people know installp as well
as they know rpm (at command-line). If you do not know installp at the
command line level
a) run rm -f /where/you/download/to/.toc after everytime you add a file
b) use "smit install" to install filesets
If you are comfortable with installp cli interface the standard commands
to remember are:
a) inutoc /where/you/download/to
b) installp -d /where/you/download/to -L # to list filesets
c) installp -d /where/you/download/to -agX <what you want to install> |
"all"
Part II
a) I download R-project files to /data/prj/cran/downloads
b) cd /data/prj/cran
gzip -dc downloads/R-3.2.3.tar.gz | tar xf -
cp -rp R-3.2.3 R-3.2.3.dist
c) ls -l 32/*.env 64/*.env
sdiff -w ??/aix.env
cat bin/my_shared.ksh
d) slibclean; rm -rf 32/R-3.2.3; rm -rf 64/R-3.2.3
mkdir 32/R-3.2.3
mkdir 64/R-3.2.3
e) note current diffs between R-3.2.3 and R-3.2.3.dist
root@x072:[/data/prj/cran]diff -ru R-3.2.3.dist R-3.2.3
diff -ru R-3.2.3.dist/configure R-3.2.3/configure
--- R-3.2.3.dist/configure 2015-12-02 23:16:46.000000000 +0000
+++ R-3.2.3/configure 2015-12-16 10:52:15.000000000 +0000
@@ -26339,11 +26339,11 @@
##ADD: However, for example, symbol in libc of memcpy is
__memmove,__memmove64.
##ADD: This black magic puts lc before lR and pockets this.
if test "x${OBJECT_MODE}" = "x64"; then
- main_ldflags="${wl}-brtl ${wl}-bexpall ${wl}-bpT:0x100000000
${wl}-bpD:0x110000000 -lc"
+ main_ldflags="${wl}-brtl ${wl}-bpT:0x100000000
${wl}-bpD:0x110000000 -lc"
else
- main_ldflags="${wl}-brtl ${wl}-bexpall -lc"
+ main_ldflags="${wl}-brtl ${wl}-bmaxdata:0xd0000000/dsa -lc"
fi
- shlib_ldflags="${wl}-brtl ${wl}-G ${wl}-bexpall ${wl}-bnoentry -lc"
+ shlib_ldflags="${wl}-G ${wl}-bnoentry -lc"
SHLIB_LIBADD="\$(LIBM)"
shlib_cxxldflags="${shlib_ldflags}"
if test "${GCC}" = yes; then
diff -ru R-3.2.3.dist/share/make/basepkg.mk R-3.2.3/share/make/basepkg.mk
--- R-3.2.3.dist/share/make/basepkg.mk 2015-03-18 23:04:12.000000000 +0000
+++ R-3.2.3/share/make/basepkg.mk 2015-12-17 12:01:02.000000000 +0000
@@ -148,7 +148,9 @@
sysdata: $(srcdir)/R/sysdata.rda
@$(ECHO) "installing 'sysdata.rda'"
- @$(ECHO)
"tools:::sysdata2LazyLoadDB(\"$(srcdir)/R/sysdata.rda\",\"$(top_builddir)/library/$(pkg)/R\")"
| \
+ $(ECHO) "warnings()" | \
+ R_DEFAULT_PACKAGES=NULL LC_ALL=C $(R_EXE)
+ $(ECHO)
"tools:::sysdata2LazyLoadDB(\"$(srcdir)/R/sysdata.rda\",\"$(top_builddir)/library/$(pkg)/R\")"
| \
R_DEFAULT_PACKAGES=NULL LC_ALL=C $(R_EXE)
diff -ru R-3.2.3.dist/src/include/Defn.h R-3.2.3/src/include/Defn.h
--- R-3.2.3.dist/src/include/Defn.h 2015-08-25 22:15:24.000000000 +0000
+++ R-3.2.3/src/include/Defn.h 2015-12-16 10:53:08.000000000 +0000
@@ -1271,7 +1271,7 @@
void invalidate_cached_recodings(void); /* from sysutils.c */
void resetICUcollator(void); /* from util.c */
void dt_invalidate_locale(); /* from Rstrptime.h */
- int R_OutputCon; /* from connections.c */
+ extern int R_OutputCon; /* from connections.c */
extern int R_InitReadItemDepth, R_ReadItemDepth; /* from serialize.c */
void get_current_mem(size_t *,size_t *,size_t *); /* from memory.c */
unsigned long get_duplicate_counter(void); /* from duplicate.c */
diff -ru R-3.2.3.dist/src/library/tools/R/makeLazyLoad.R
R-3.2.3/src/library/tools/R/makeLazyLoad.R
--- R-3.2.3.dist/src/library/tools/R/makeLazyLoad.R 2015-08-25
22:16:54.000000000 +0000
+++ R-3.2.3/src/library/tools/R/makeLazyLoad.R 2015-12-17
06:53:34.000000000 +0000
@@ -38,9 +38,13 @@
sysdata2LazyLoadDB <- function(srcFile, destDir, compress = TRUE)
{
+ browser()
e <- new.env(hash=TRUE)
+ # browser()
load(srcFile, e)
+ # browser()
makeLazyLoadDB(e, file.path(destDir, "sysdata"), compress = compress)
+ # browser()
}
list_data_in_pkg <- function(package, lib.loc = NULL, dataDir = NULL)
diff -ru R-3.2.3.dist/src/library/tools/src/gramLatex.c
R-3.2.3/src/library/tools/src/gramLatex.c
--- R-3.2.3.dist/src/library/tools/src/gramLatex.c 2015-12-09
23:20:01.000000000 +0000
+++ R-3.2.3/src/library/tools/src/gramLatex.c 2015-12-17
14:50:14.000000000 +0000
@@ -1358,7 +1358,7 @@
/* The lookahead symbol. */
- int yychar;
+ extern int yychar;
#ifndef YY_IGNORE_MAYBE_UNINITIALIZED_BEGIN
@@ -1370,7 +1370,7 @@
#endif
/* The semantic value of the lookahead symbol. */
- YYSTYPE yylval YY_INITIAL_VALUE(yyval_default);
+ extern YYSTYPE yylval YY_INITIAL_VALUE(yyval_default);
/* Location data for the lookahead symbol. */
YYLTYPE yylloc
@@ -1381,7 +1381,7 @@
/* Number of syntax errors so far. */
- int yynerrs;
+ extern int yynerrs;
/*----------.
diff -ru R-3.2.3.dist/src/library/tools/src/gramRd.c
R-3.2.3/src/library/tools/src/gramRd.c
--- R-3.2.3.dist/src/library/tools/src/gramRd.c 2015-12-09
23:20:01.000000000 +0000
+++ R-3.2.3/src/library/tools/src/gramRd.c 2015-12-17
14:51:19.000000000 +0000
@@ -1972,7 +1972,7 @@
/* The lookahead symbol. */
- int yychar;
+ extern int yychar;
#ifndef YY_IGNORE_MAYBE_UNINITIALIZED_BEGIN
@@ -1984,7 +1984,7 @@
#endif
/* The semantic value of the lookahead symbol. */
- YYSTYPE yylval YY_INITIAL_VALUE(yyval_default);
+ extern YYSTYPE yylval YY_INITIAL_VALUE(yyval_default);
/* Location data for the lookahead symbol. */
YYLTYPE yylloc
@@ -1995,7 +1995,7 @@
/* Number of syntax errors so far. */
- int yynerrs;
+ extern int yynerrs;
/*----------.
+++++++++
The changes in /src/library/tools/R/makeLazyLoad.R are not relevant
(initial learning...)
f) cd 32/R-3.2.3; ../../bin/my_shared.ksh aix R-3.2.3; export
OBJECT_MODE=32; make -j4; cd -
g) cd 64/R-3.2.3; ../../bin/my_shared.ksh aix R-3.2.3; export
OBJECT_MODE=64; make -j4 && cd -
Michael
p.s. please keep me posted on any difficulties - so I can add better
instructions on the wiki.
p.p.s. - I am using R-3.2.3 to by-pass the removal of the src/extra packages
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