Hello Everyone,
After trying several ways to compile R 3.2.2 without luck, I�m reaching out for
help.
The �make check� does not hanges for some reason and when
trying to install a package it cannot list the download sites (see below).
What could be the problem?
./configure --enable-R-shlib --enable-BLAS-shlib
hostname = test
uname -m = x86_64
uname -r = 2.6.32-573.7.1.el6.x86_64
uname -s = Linux
uname -v = #1 SMP Thu Sep 10 13:42:16 EDT 2015
OS: Red Hat 6.7
configuring Java ...
Java interpreter : /usr/bin/java
Java version : 1.7.0_85
Java home path : /usr/lib/jvm/java-1.7.0-openjdk-1.7.0.85.x86_64/jre
Java compiler : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar
trying to compile and link a JNI program
detected JNI cpp flags : -I$(JAVA_HOME)/../include
-I$(JAVA_HOME)/../include/linux
detected JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm
make[2]: Entering directory `/tmp/Rjavareconf.lcq59l'
gcc -std=gnu99 -I/home/dmccully/R-3.2.2/include -DNDEBUG
-I/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.85.x86_64/jre/../include
-I/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.85.x86_64/jre/../include/linux
-I/usr/local/include -fpic -g -O2 -c conftest.c -o conftest.o
gcc -std=gnu99 -shared -L/home/dmccully/R-3.2.2/lib -L/usr/local/lib64 -o
conftest.so conftest.o
-L/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.85.x86_64/jre/lib/amd64/server -ljvm
-L/home/dmccully/R-3.2.2/lib -lR
make[2]: Leaving directory `/tmp/Rjavareconf.lcq59l'
JAVA_HOME : /usr/lib/jvm/java-1.7.0-openjdk-1.7.0.85.x86_64/jre
Java library path: $(JAVA_HOME)/lib/amd64/server
JNI cpp flags : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux
JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm
Updating Java configuration in /home/dmccully/R-3.2.2
Done.
make[1]: Leaving directory `/home/dmccully/R-3.2.2'
[root@test R-3.2.2]# pwd
/home/dmccully/R-3.2.2
[root@test R-3.2.2]# make check
make[1]: Entering directory `/home/dmccully/R-3.2.2/tests'
make[2]: Entering directory `/home/dmccully/R-3.2.2/tests'
make[3]: Entering directory `/home/dmccully/R-3.2.2/tests/Examples'
Testing examples for package �base�
> install.packages("ggplot2")
--- Please select a CRAN mirror for use in this session ---
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