On Wed, Mar 19, 2014 at 11:50 AM, Joshua Ulrich <josh.m.ulr...@gmail.com>
wrote:
>
> The suggested solution is not described in the referenced article. It
> was not suggested that it be the operating system's responsibility to
> distribute snapshots, nor was it suggested to create binary
> repositories for specific operating systems, nor was it suggested to
> freeze only a subset of CRAN packages.
IMO this is an implementation detail. If we could all agree on a particular
set of cran packages to be used with a certain release of R, then it
doesn't matter how the 'snapshotting' gets implemented. It could be a
separate repository, or a directory on cran with symbolic links, or a page
somewhere with hyperlinks to the respective source packages. Or you can put
all packages in a big zip file, or include it in your OS distribution. You
can even distribute your entire repo on cdroms (debian style!) or do all of
the above.
The hard problem is not implementation. The hard part is that for
reproducibility to work, we need community wide conventions on which
versions of cran packages are used by a particular release of R. Local
downstream solutions are impractical, because this results in
scripts/packages that only work within your niche using this particular
snapshot. I expect that requiring every script be executed in the context
of dependencies from some particular third party repository will make
reproducibility even less common. Therefore I am trying to make a case for
a solution that would naturally improve reliability/reproducibility of R
code without any effort by the end-user.
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