As Berend Hasselman already told you, "Then surf to the address given at the end of each posting; go to the bottom of that page and follow the instructions for unsubscribing."
Here's the link, so you don't have to scroll to the bottom of this message: https://stat.ethz.ch/mailman/listinfo/r-devel -- Joshua Ulrich | about.me/joshuaulrich FOSS Trading | www.fosstrading.com On Mon, Sep 23, 2013 at 4:57 PM, Eric Malitz <eric.mal...@gmail.com> wrote: > take me off here > > > On Mon, Sep 23, 2013 at 4:44 PM, Marc Schwartz <marc_schwa...@me.com> wrote: > >> Spencer, >> >> FYI. I just noted in your post below the error message from WriteXLS >> regarding TEXT::CSV_XS missing. >> >> Please note that in version >=3.0 of WriteXLS (current is 3.2.1), that is >> no longer required and has been replaced by Text::CSV_PP, which is a Pure >> Perl module and is included in the WriteXLS CRAN package to reduce the >> dependencies on nonstandard external Perl modules. >> >> Regards, >> >> Marc Schwartz >> >> >> On Sep 23, 2013, at 4:28 PM, Spencer Graves <spencer.gra...@prodsyse.com> >> wrote: >> >> > Hello, All: >> > >> > >> > Professor Ripley is correct as usual: I misunderstood his original >> statement of the problem. >> > >> > >> > He gave two possible solutions. I could not make the first >> solution work, and I didn't try the second until someone else on this list >> explained it in slightly more detail. >> > >> > >> > The correction passed R CMD check on my local computer. It has >> been "building" on R-Forge since 2013-09-20 19:19:14+02. I hope this >> completes soon enough for me to meet Ripley's Sept. 25 deadline for this >> correction to "sos". >> > >> > >> > Thanks again to Prof. Ripley and everyone else who took the time to >> read my post. >> > >> > >> > Spencer >> > >> > >> > On 9/19/2013 12:00 AM, Prof Brian Ripley wrote: >> >> This is nothing to do with CRAN policies (nor R). >> >> >> >> The issue is that the current upquote.sty does not play with 'ae' fonts >> as used by default by Sweave. The change is in TeX. >> >> >> >> And that was what Spencer Graves was informed. >> >> >> >> >> >> On 19/09/2013 04:35, Spencer Graves wrote: >> >>> Hello, All: >> >>> >> >>> >> >>> The vignette with the sos package used "upquote.sty", required >> >>> for R Journal when it was published in 2009. Current CRAN policy >> >>> disallows "upquote.sty", and I've so far not found a way to pass "R CMD >> >>> check" with sos without upquote.sty. >> >>> >> >>> >> >>> I changed sos.Rnw per an email exchange with Prof. Ripley without >> >>> solving the problem; see below. The key error messages (see the >> results >> >>> of "R CMD build" below) appear to be "sos.tex:16: LaTeX Error: >> >>> Environment article undefined" and " sos.tex:558: LaTeX Error: >> >>> \begin{document} ended by \end{article}." When the article worked, it >> >>> had bot \begin{document} and \begin{article}, with matching \end >> >>> statements for both. I've tried commenting out either without success. >> >>> >> >>> >> >>> The current nonworking code is available on R-Forge via anonymous >> >>> SVN checkout using "svn checkout >> >>> svn://svn.r-forge.r-project.org/svnroot/rsitesearch/". Any suggestions >> >>> on how to fix this would be greatly appreciated. >> >>> >> >>> >> >>> Thanks, >> >>> Spencer >> >>> >> >>> >> >>> ###### COMPLETE RESULTS FROM R CMD check ######## >> >>> >> >>> >> >>> Microsoft Windows [Version 6.1.7600] >> >>> Copyright (c) 2009 Microsoft Corporation. All rights reserved. >> >>> >> >>> C:\Users\sgraves>cd 2013 >> >>> C:\Users\sgraves\2013>cd R_pkgs >> >>> C:\Users\sgraves\2013\R_pkgs>cd sos >> >>> C:\Users\sgraves\2013\R_pkgs\sos>cd pkg >> >>> C:\Users\sgraves\2013\R_pkgs\sos\pkg>R CMD build sos >> >>> * checking for file 'sos/DESCRIPTION' ... OK >> >>> * preparing 'sos': >> >>> * checking DESCRIPTION meta-information ... OK >> >>> * installing the package to re-build vignettes >> >>> * creating vignettes ... ERROR >> >>> Loading required package: brew >> >>> >> >>> Attaching package: 'sos' >> >>> >> >>> The following object is masked from 'package:utils': >> >>> >> >>> ? >> >>> >> >>> Loading required package: WriteXLS >> >>> Perl found. >> >>> >> >>> The following Perl modules were not found on this system: >> >>> >> >>> Text::CSV_XS >> >>> >> >>> If you have more than one Perl installation, be sure the correct one >> was >> >>> used he >> >>> re. >> >>> >> >>> Otherwise, please install the missing modules. See the package INSTALL >> >>> file for >> >>> more information. >> >>> >> >>> Loading required package: RODBC >> >>> Warning in odbcUpdate(channel, query, mydata, coldata[m, ], test = >> test, : >> >>> character data 'Adrian Baddeley <adrian.badde...@uwa.edu.au> and >> >>> Rolf Turner >> >>> <r.tur...@auckland.ac.nz> with substantial contributions of code by >> >>> Kasper Klitgaard Berthelsen; Abdollah Jalilian; Marie-Colette van >> Liesho >> >>> ut; Ege Rubak; Dominic Schuhmacher; and Rasmus >> >>> Waagepetersen. >> >>> Additional contributions by Q.W. Ang; S. Azaele; C. Beale; >> >>> R. Bernhardt; T. Bendtsen; A. Bevan; B. Biggerstaff; R. >> Bivan >> >>> d; F. Bonneu; J. Burgos; S. Byers; Y.M. Chang; >> J.B. >> >>> Che >> >>> n; I. Chernayavsky; Y.C. Chin; B. Christensen; J.-F. >> Co >> >>> eurjolly; R. Corria Ainslie; M. de la Cruz; P. Dalgaard; >> >>> P.J. Dig >> >>> gle; P. Donnelly; I. Dryden; S. Eglen; O. Flores; N. >> >>> Funwi-Gabga; >> >>> A. Gault; M. Genton; J. Gilbey; J. Goldstick; >> >>> P. Graba >> >>> rnik; C. Graf; J. Franklin; U. Hahn; A. Hardegen; M. >> >>> Herin >> >>> g; M.B. Hansen; M. Hazelton; J. Heikkinen; K. Hornik; R. >> Ihaka >> >>> ; A. Jammalamadaka; R. John-Chandran; D. Johnson; M. >> >>> Kuhn; >> >>> J. Laake; F. Lavancier; T. Lawrence; R.A. Lamb; >> >>> J. Lee; >> >>> G.P. Leser; [... truncated] >> >>> Warning in odbcUpdate(channel, query, mydata, coldata[m, ], test = >> test, : >> >>> character data 'John Fox [aut, cre], Sanford Weisberg [aut], Douglas >> >>> Bates [ct >> >>> b], Steve Ellison [ctb], David Firth [ctb], Michael Friendly [ctb], >> >>> Gregor Gorja >> >>> nc [ctb], Spencer Graves [ctb], Richard Heiberger [ctb], Rafael >> >>> Laboissiere [ctb >> >>> ], Georges Monette [ctb], Henric Nilsson [ctb], Derek Ogle [ctb], Brian >> >>> Ripley [ >> >>> ctb], Achim Zeileis [ctb], R-Core [ctb]' truncated to 255 bytes in >> >>> column 'Autho >> >>> r' >> >>> Warning in odbcUpdate(channel, query, mydata, coldata[m, ], test = >> test, : >> >>> character data 'John Fox [aut, cre], Liviu Andronic [ctb], Michael >> >>> Ash [ctb], >> >>> Milan Bouchet-Valat [ctb], Theophilius Boye [ctb], Stefano Calza [ctb], >> >>> Andy Cha >> >>> ng [ctb], Philippe Grosjean [ctb], Richard Heiberger [ctb], Kosar >> Karimi >> >>> Pour [c >> >>> tb], G. Jay Kerns [ctb], Renaud Lancelot [ctb], Matthieu Lesnoff [ctb], >> >>> Uwe Ligg >> >>> es [ctb], Samir Messad [ctb], Martin Maechler [ctb], Robert Muenchen >> >>> [ctb], Dunc >> >>> an Murdoch [ctb], Erich Neuwirth [ctb], Dan Putler [ctb], Brian Ripley >> >>> [ctb], Mi >> >>> roslav Ristic [ctb], Peter Wolf [ctb]' truncated to 255 bytes in column >> >>> 'Author' >> >>> >> >>> Perl found. >> >>> >> >>> The following Perl modules were not found on this system: >> >>> >> >>> Text::CSV_XS >> >>> >> >>> If you have more than one Perl installation, be sure the correct one >> was >> >>> used he >> >>> re. >> >>> >> >>> Otherwise, please install the missing modules. See the package INSTALL >> >>> file for >> >>> more information. >> >>> >> >>> Warning in odbcUpdate(channel, query, mydata, coldata[m, ], test = >> test, : >> >>> character data 'Adrian Baddeley <adrian.badde...@uwa.edu.au> and >> >>> Rolf Turner >> >>> <r.tur...@auckland.ac.nz> with substantial contributions of code by >> >>> Kasper Klitgaard Berthelsen; Abdollah Jalilian; Marie-Colette van >> Liesho >> >>> ut; Ege Rubak; Dominic Schuhmacher; and Rasmus >> >>> Waagepetersen. >> >>> Additional contributions by Q.W. Ang; S. Azaele; C. Beale; >> >>> R. Bernhardt; T. Bendtsen; A. Bevan; B. Biggerstaff; R. >> Bivan >> >>> d; F. Bonneu; J. Burgos; S. Byers; Y.M. Chang; >> J.B. >> >>> Che >> >>> n; I. Chernayavsky; Y.C. Chin; B. Christensen; J.-F. >> Co >> >>> eurjolly; R. Corria Ainslie; M. de la Cruz; P. Dalgaard; >> >>> P.J. Dig >> >>> gle; P. Donnelly; I. Dryden; S. Eglen; O. Flores; N. >> >>> Funwi-Gabga; >> >>> A. Gault; M. Genton; J. Gilbey; J. Goldstick; >> >>> P. Graba >> >>> rnik; C. Graf; J. Franklin; U. Hahn; A. Hardegen; M. >> >>> Herin >> >>> g; M.B. Hansen; M. Hazelton; J. Heikkinen; K. Hornik; R. >> Ihaka >> >>> ; A. Jammalamadaka; R. John-Chandran; D. Johnson; M. >> >>> Kuhn; >> >>> J. Laake; F. Lavancier; T. Lawrence; R.A. Lamb; >> >>> J. Lee; >> >>> G.P. Leser; [... truncated] >> >>> Warning in odbcUpdate(channel, query, mydata, coldata[m, ], test = >> test, : >> >>> character data 'John Fox [aut, cre], Sanford Weisberg [aut], Douglas >> >>> Bates [ct >> >>> b], Steve Ellison [ctb], David Firth [ctb], Michael Friendly [ctb], >> >>> Gregor Gorja >> >>> nc [ctb], Spencer Graves [ctb], Richard Heiberger [ctb], Rafael >> >>> Laboissiere [ctb >> >>> ], Georges Monette [ctb], Henric Nilsson [ctb], Derek Ogle [ctb], Brian >> >>> Ripley [ >> >>> ctb], Achim Zeileis [ctb], R-Core [ctb]' truncated to 255 bytes in >> >>> column 'Autho >> >>> r' >> >>> Warning in odbcUpdate(channel, query, mydata, coldata[m, ], test = >> test, : >> >>> character data 'John Fox [aut, cre], Liviu Andronic [ctb], Michael >> >>> Ash [ctb], >> >>> Milan Bouchet-Valat [ctb], Theophilius Boye [ctb], Stefano Calza [ctb], >> >>> Andy Cha >> >>> ng [ctb], Philippe Grosjean [ctb], Richard Heiberger [ctb], Kosar >> Karimi >> >>> Pour [c >> >>> tb], G. Jay Kerns [ctb], Renaud Lancelot [ctb], Matthieu Lesnoff [ctb], >> >>> Uwe Ligg >> >>> es [ctb], Samir Messad [ctb], Martin Maechler [ctb], Robert Muenchen >> >>> [ctb], Dunc >> >>> an Murdoch [ctb], Erich Neuwirth [ctb], Dan Putler [ctb], Brian Ripley >> >>> [ctb], Mi >> >>> roslav Ristic [ctb], Peter Wolf [ctb]' truncated to 255 bytes in column >> >>> 'Author' >> >>> >> >>> Warning: running command >> >>> '"C:\PROGRA~2\MIKTEX~1.9\miktex\bin\texi2dvi.exe" --qui >> >>> et --pdf "sos.tex" -I >> >>> "C:/Users/sgraves/pgms/R/R-3.0.1/share/texmf/tex/latex" - >> >>> I "C:/Users/sgraves/pgms/R/R-3.0.1/share/texmf/bibtex/bst"' had status >> 1 >> >>> Error: running 'texi2dvi' on 'sos.tex' failed >> >>> >> >>> LaTeX errors: >> >>> sos.tex:16: LaTeX Error: Environment article undefined. >> >>> >> >>> See the LaTeX manual or LaTeX Companion for explanation. >> >>> Type H <return> for immediate help >> >>> Your command was ignored. >> >>> sos.tex:558: LaTeX Error: \begin{document} ended by \end{article}. >> >>> >> >>> See the LaTeX manual or LaTeX Companion for explanation. >> >>> Type H <return> for immediate help >> >>> Your command was ignored. >> >>> Execution halted >> >>> >> >>> >> >>> On 9/13/2013 12:39 AM, Prof Brian Ripley wrote: >> >>>> On 13/09/2013 08:30, Spencer Graves wrote: >> >>>>> Dear Prof. Ripley: >> >>>>> >> >>>>> >> >>>>> What do you recommend I do with the vignette that comes with >> that >> >>>>> package? >> >>>>> >> >>>>> >> >>>>> That vignette is a copy of the article published in the R >> Journal >> >>>>> vol. 1/2, Dec. 2009. That publication seemed to require me to use >> >>>>> RJournal.sty. When I removed RJournal.sty from the vignette >> >>>>> subdirectory, "R CMD build" failed. I have no idea what you want me >> to >> >>>>> do to fix this problem. Further assistance would be appreciated. >> >>>> >> >>>> Don't spam all the other addressees! >> >>>> >> >>>> The issue is using RJournal.sty in a vignette with ae fonts. I am >> >>>> guessing that >> >>>> >> >>>> \usepackage[noae]{Sweave} >> >>>> >> >>>> might work: otherwise you need to remove the reference to upquote.sty >> >>>> in RJournal.sty. >> >>>> >> >>>> >> >>>>> >> >>>>> >> >>>>> Thanks, >> >>>>> Spencer Graves >> >>>>> >> >>>>> >> >>>>> p.s. I understand reasonably well R and the *.Rd documentation >> >>>>> standard, thanks in part to your book on "Modern Applied Statistics >> with >> >>>>> S" and the documentation that ships with R. However, this is the only >> >>>>> vignette I've written, and I have not used LaTeX much for anything >> else >> >>>>> apart from Ramsay, Hooker and Graves (2009) Functional Data Analysis >> >>>>> with R and Matlab (Springer). >> >>>>> >> >>>>> >> >>>>> On 9/9/2013 3:07 PM, Brian S Yandell wrote: >> >>>>>> Brian, >> >>>>>> I am making changes, downloading new version of Sweave.sty and >> >>>>>> upquote.sty. However, it is not clear to me how to properly credit >> >>>>>> Fritz Leisch and others for Sweave. Do you mean in the sweave >> document >> >>>>>> (*.Rnw)? Or is there a place in the package assembly for this? (it >> >>>>>> seems not in DESCRIPTION or CITATION, but where else). I could not >> >>>>>> find anything about this in "Writing R Extensions". >> >>>>>> Thanks for any guidance, >> >>>>>> Brian >> >>>>>> On 9/9/13 12:02 AM, Prof Brian Ripley wrote: >> >>>>>>> Earlier versions of Sweave.sty and Rd.sty only work with the >> >>>>>>> upquote.sty in earlier versions of R and not that currently being >> >>>>>>> distributed in TeX distributions. R >= 3.0.2 will not contain any >> >>>>>>> version of upquote.sty. >> >>>>>>> >> >>>>>>> In particular, they do not work with the 'ae' fonts which are the >> >>>>>>> default for Sweave vignettes. Packages >> >>>>>>> >> >>>>>>> boolfun calibrate popReconstruct qtlnet >> >>>>>>> >> >>>>>>> have copies in vignettes and now fail. >> >>>>>>> >> >>>>>>> Please remove them. Note too that you did not comply with the CRAN >> >>>>>>> policies on giving credit by including them in your package but not >> >>>>>>> crediting their authors: do check very carefully that there are no >> >>>>>>> other missing credits. >> >>>>>>> >> >>>>>>> Package PSM has vignettes which include upquote.sty. >> >>>>>>> >> >>>>>>> Packages makeR and sos include RJournal.sty which includes >> >>>>>>> upquote.sty: same problem. >> >>>>>>> >> >>>>>>> Please update your package as soon as possible and definitely >> before >> >>>>>>> the release of 3.0.2 on Sept 25. >> > >> > ______________________________________________ >> > R-devel@r-project.org mailing list >> > https://stat.ethz.ch/mailman/listinfo/r-devel >> >> ______________________________________________ >> R-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-devel >> > > [[alternative HTML version deleted]] > > ______________________________________________ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
