Thanks for you help Martin,
On Tue, Sep 11, 2012 at 8:22 PM, Martin Morgan <mtmor...@fhcrc.org> wrote:
> On 09/11/2012 04:19 PM, Henrik Bengtsson wrote:
>>
>> Hi,
>>
>> I'm trying to implement an abort() method that works just like stop()
>> but does not signal the condition such that try() and tryCatch(...,
>> condition=...) are, contrary to stop(), effectively non-working with
>> abort() calls.
>>
>> In order to achieve this, I stumbled upon invokeRestart("abort"), cf.
>> help("invokeRestart", package="base") that reads "Restarts are used
>> for establishing recovery protocols. They can be established using
>> withRestarts. One pre-established restart is an abort restart that
>> represents a jump to top level.".
>>
>> So, my current implementation is (roughly):
>>
>> abort <- function(...) {
>> # handling messages etc
>>
>> # Fully abort the R evaluation and return to the top level
>> invokeRestart("abort")
>> }
>>
>> I've tested it in various setups with and without tryCatch(...,
>> condition=...) and so on and it appears to work. Does anyone know if
>> I'm overlooking something or can I count on invokeRestart("abort") to
>> always stop any currently evaluated R code?
>
>
> Not sure what 'currently evaluating R code' means, but
>
> f = function(x) {
> on.exit(cat("never say die\n"))
> invokeRestart("abort")
> }
>
>> f()
> never say die
I forgot about on.exit(), though this is how I'd like abort() to
behave, i.e. abort() = stop() minus signalling.
>
> g = function() {
> reg.finalizer(new.env(), function(...)
> cat("not dead yet\n"))
> invokeRestart("abort")
> }
>> g()
>> gc()
> not dead yet
> used (Mb) gc trigger (Mb) max used (Mb)
> Ncells 170841 9.2 47185920 2520 709729 38.0
> Vcells 145992 1.2 268435456 2048 1023614 7.9
This one too.
>
> h = function() {
> withRestarts(f(), abort=function(...) {
> cat("I'm sorry Henrik, I can't do that\n")
> TRUE
> })
> }
>
>> h()
> never say die
> I'm sorry Henrik, I can't do that
> [1] TRUE
>
> all evaluate code after invoking abort.
This one I would never figure out/think of myself. Although the abort
is caught here, at least the behavior of abort() is consistent with
stop() here too. So for now, I'm (still) satisfied.
>
>
>>
>> Also, does anyone know how far back (in R versions) invokeRestart("abort")
>> goes?
>
>
> $ svn blame conditions.Rd
>
> says that the line you quote is from r25527 (which is when tryCatch appears
> to have been introduced), and
>
> $ svn info -r25527
> Path: man
> URL: https://svn.r-project.org/R/trunk/src/library/base/man
> Repository Root: https://svn.r-project.org/R
> Repository UUID: 00db46b3-68df-0310-9c12-caf00c1e9a41
> Revision: 25527
> Node Kind: directory
> Last Changed Author: luke
> Last Changed Rev: 25527
> Last Changed Date: 2003-07-31 12:35:18 -0700 (Thu, 31 Jul 2003)
Perfect.
/Henrik
>
>>
>> Thxs,
>>
>> Henrik
>>
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>>
>
>
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