I recently submit a package called QuasiSeq. The package source and
Windows binary worked fine, but the MacOS X binary failed. The bottom of
the CRAN page for QuasiSeq shows
Downloads:
Package source: QuasiSeq_1.0-1.tar.gz
MacOS X binary: not available, see check log.
Windows binary: QuasiSeq-1.0-1.zip
Reference manual: QuasiSeq.pdf
The log for the MacOS X binary shows
- using R version 2.15.0 (2012-03-30)
- using platform: i386-apple-darwin9.8.0 (32-bit)
- using session charset: ASCII
- checking for file 'QuasiSeq/DESCRIPTION' ... OK
- this is package 'QuasiSeq' version '1.0-1'
- checking package namespace information ... OK
- checking package dependencies ... ERROR
Package required but not available: 'edgeR'
See the information on DESCRIPTION files in the chapter
'Creating R
packages' of the 'Writing R Extensions' manual.
- elapsed time (check, wall clock): 0:01
Is there a simple remedy to the problems caused by the dependency on edgeR,
or would you advise that I put a work-around into my source code using
'require' so I can list edgeR under Suggests instead of Depends or Includes?
Thank you for your time!
-Steve
On Tue, Jan 3, 2012 at 7:42 AM, Uwe Ligges
<[email protected]>wrote:
>
>
> On 03.01.2012 00:16, Steven Lund wrote:
>
>> I know others have asked similar questions to the R developers, but I
>> could not find the solution to this question. Please forgive me if I
>> have missed a crucial point in a previous post.
>>
>> I would like to submit a package to CRAN that depends on the
>> bioconductor package "edgeR". Listing "edgeR" under the Depends or
>> Imports lines in the DESCRIPTION file for my package causes an error
>> when running the `R CMD check' command on my package's 'tar.gz' file:
>>
>> * checking package dependencies ... ERROR
>> Package required but not available: ÄedgeRÄ
>>
>>
>> Is there documentation or an example anywhere of how to handle
>> dependencies on Bioconductor packages when creating a package for
>> CRAN?
>>
>
>
> Same as for CRAN packages. The CRAN check farm will automatically install
> the dependency from BioConductor if available for the corresponding
> platform / R version.
>
> Uwe Ligges
>
>
>
>
>
>> Thank you!
>>
>> -Steve
>>
>> ______________________________**________________
>> [email protected] mailing list
>> https://stat.ethz.ch/mailman/**listinfo/r-devel<https://stat.ethz.ch/mailman/listinfo/r-devel>
>>
>
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