On 18/04/2012 00:51, Duncan Murdoch wrote:
On 12-04-17 5:24 PM, andre zege wrote:
I am unable to compile R-2.15.0 source. I configured it without problems
with options that i used many times before
./configure --prefix=/home/andre/R-2.15.0
--enable-byte-compiled-packages=no --with-tcltk --enable-R-shlib=yes
Then when i started making it, it died while making lapack,
particularly on
the line
gfortran -fopenmp -fpic -g -O2 -c dlapack3.f -o dlapack3.o
dlapack3.f: In function ‘dsbgst’:
dlapack3.f:12097: fatal error: internal consistency failure
compilation terminated.
make[4]: *** [dlapack3.o] Error 1
Could anyone give me a clue what is going wrong and how could i fix
that? I
am running Centos 5.5, in particular, the following
$ more /proc/version
Linux version 2.6.18-194.el5 (mockbu...@builder10.centos.org) (gcc
version
4.1.2 20080704 (Red Hat 4.1.2-48)) #1 SMP Fri Apr 2 14:58:14 EDT 2010
That looks like a message from your compiler. I think gcc 4.1.2 is
fairly old (Windows builds are using gcc 4.6.3). Perhaps it's time to
upgrade.
Correct, it is very old (the date shows 2008). But then so are the
lapack sources, and that file is unchanged since 2006 (and R compiled on
Linux perfectly well over those years). So if R compiled on this system
before, the system has changed ....
Your first port of call is to see if there are missing patches on your
OS, then report to the vendor. I might see if a lower optimization
level would work.
Duncan Murdoch
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Brian D. Ripley, rip...@stats.ox.ac.uk
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