On Thu, 10 Feb 2011, Prof Brian Ripley wrote:
There are lots of problems with MCMCpack's C++: the only way (short of a
major rewrite) that you will get it to compile on Solaris is to use g++ (and
even that needs corrections).
The maintainers seem deaf to reports of the issues.
And please note what the posting guide says about where to send questions
about non-R programming issues.
Sorry, I omitted 'in contributed packages'. And PLEASE don't post
twice.
The patch I needed on x86 Solaris was
diff -ru tests32/MCMCpack/src/algorithm.h MCMCpack/src/algorithm.h
--- tests32/MCMCpack/src/algorithm.h Mon Jan 31 17:28:11 2011
+++ MCMCpack/src/algorithm.h Sun May 16 19:15:39 2010
@@ -45,6 +45,11 @@
#include "scythestat/matrix_random_access_iterator.h"
#endif
+#undef DO
+#undef DS
+#undef SO
+#undef SS
+
On Wed, 9 Feb 2011, Zhang,Jun wrote:
Hi list,
I tried to install MCMCpack to R-2.12.0, got the following error,
R CMD INSTALL MCMCpack_1.0-9.tar.gz
..........
CC -m64 -library=stlport4 -I/apps/sparcv9/R-2.12.0/lib/R/include
-DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DHAVE_TRUNC -DHAVE_IEEEFP_H
-I/opt/csw/include -KPIC -g -c MCMCSVDreg.cc<http://MCMCSVDreg.cc> -o
MCMCSVDreg.o
"error.h", line 598: Error: The function "abort" must have a prototype.
"distributions.h", line 550: Error: The function "trunc" must have a
prototype.
"distributions.h", line 550: Error: log1p is not a member of file level.
"distributions.h", line 566: Error: The function "trunc" must have a
prototype.
"distributions.h", line 566: Error: log1p is not a member of file level.
"distributions.h", line 2177: Error: sqrt is not a member of file level.
6 Error(s) detected.
make: *** [MCMCSVDreg.o] Error 2
ERROR: compilation failed for package 'MCMCpack'
* removing '/apps/sparcv9/R-2.12.0/lib/R/library/MCMCpack'
root@dqssun4 local# which cc
/opt/solstudio12.2/bin/cc
root@dqssun4 local# which R
/apps/sparcv9/R-2.12.0/bin/R
The configure script for the successful R installation is the following,
CC="cc -xc99 -m64 -xarch=sparcvis2"
CPPFLAGS="-I/opt/csw/include"
CFLAGS="-xcode=abs64 -xlibmieee -xtarget=ultra3 -xarch=sparcvis2"
F77=f95
CXX="CC -m64 -library=stlport4"
FC=$F77
FFLAGS="-m64 -xarch=sparcvis2"
FCFLAGS=$FFLAGS
LDFLAGS="-L/opt/csw/lib/sparcv9 -L/opt/solstudio12.2/prod/lib/v9"
export CC CPPFLAGS CFLAGS F77 FFLAGS CXX CXXFLAGS FC FCFLAGS LDFLAGS
./configure --prefix=/apps/sparcv9/R-2.12.0
--with-tcl-config=/opt/csw/lib/tclCo
nfig.sh<http://nfig.sh> --with-tk-config=/opt/csw/lib/tkConfig.sh
--disable-nls
Jun Zhang
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--
Brian D. Ripley, rip...@stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
--
Brian D. Ripley, rip...@stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
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