On 26/11/2010 1:06 PM, Spencer Graves wrote:
Hello:
What do I need to do to compile R packages (especially RMySQL) for
the 64-bit version of R 2.12.0 under Vista_x64?
The symptoms you're seeing are because the linker can't functions in
libmySQL.dll
which it is looking for in the somewhat strange path
C:/PROGRA~2/MySQL/MYSQLS~1.1//bin/libmySQL.dll
Does that file exist? Is it a 64 bit dll, compatible with MinGW? Is it
compiled under the same convention as R, where no underscores are used
in external names? (The latter two questions can probably be answered
by looking at "objdump -x libmySQL.dll". objdump.exe is distributed as
part of the MinGW distribution in Rtools.)
Duncan Murdoch
I upgraded to "Rtools212.exe" yesterday but immediately got errors
from "R CMD check RMySQL_0.7-5.tar.gz". After the first error, I
installed it a second time, then got "undefined reference to" roughly 50
different names beginning "mysql_"; copied below. I see two possible
sources for this problem:
(1) RTools212 may not be installed properly.
(2) RMySQL may be incompatible with R x64 2.12.0,
especially with
a 32-bit version of MySQL.
NOTE: RMySQL worked with R2.11.1 (and MySQL 5.1.50-community server)
before I installed R2.12.0. I'm reasonably sure that my local
installation of MySQL is only 32-bit.
What do you suggest? I use the 32-bit version of R2.12.0?
Thanks,
Spencer
#####################################
* installing *source* package 'RMySQL' ...
checking for $MYSQL_HOME... C:/PROGRA~2/MySQL/MYSQLS~1.1/
cygwin warning:
MS-DOS style path detected: C:/PROGRA~2/MySQL/MYSQLS~1.1/
Preferred POSIX equivalent is: /cygdrive/c/PROGRA~2/MySQL/MYSQLS~1.1/
CYGWIN environment variable option "nodosfilewarning" turns off this
warning.
Consult the user's guide for more details about POSIX paths:
http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture
cygwin warning:
MS-DOS style path detected: C:/Users/sgraves/R/R-212~1.0/etc/x64/Makeconf
Preferred POSIX equivalent is:
/cygdrive/c/Users/sgraves/R/R-212~1.0/etc/x64/Makeconf
CYGWIN environment variable option "nodosfilewarning" turns off this
warning.
Consult the user's guide for more details about POSIX paths:
http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
x86_64-w64-mingw32-gcc -I"C:/Users/sgraves/R/R-212~1.0/include"
-I"C:/PROGRA~2/MySQL/MYSQLS~1.1/"/include -O2 -Wall -std=gnu99
-c RS-DBI.c -o RS-DBI.o
x86_64-w64-mingw32-gcc -I"C:/Users/sgraves/R/R-212~1.0/include"
-I"C:/PROGRA~2/MySQL/MYSQLS~1.1/"/include -O2 -Wall -std=gnu99
-c RS-MySQL.c -o RS-MySQL.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o RMySQL.dll tmp.def
RS-DBI.o RS-MySQL.o C:/PROGRA~2/MySQL/MYSQLS~1.1//bin/libmySQL.dll
-LC:/Users/sgraves/R/R-212~1.0/bin/x64 -lR
RS-MySQL.o:RS-MySQL.c:(.text+0xb0): undefined reference to
`mysql_more_results'
RS-MySQL.o:RS-MySQL.c:(.text+0x2c6): undefined reference to `mysql_init'
RS-MySQL.o:RS-MySQL.c:(.text+0x2d9): undefined reference to `mysql_options'
RS-MySQL.o:RS-MySQL.c:(.text+0x2ef): undefined reference to `mysql_options'
RS-MySQL.o:RS-MySQL.c:(.text+0x305): undefined reference to `mysql_options'
RS-MySQL.o:RS-MySQL.c:(.text+0x338): undefined reference to
`mysql_real_connect'
RS-MySQL.o:RS-MySQL.c:(.text+0x399): undefined reference to `mysql_close'
RS-MySQL.o:RS-MySQL.c:(.text+0x3d1): undefined reference to `mysql_error'
RS-MySQL.o:RS-MySQL.c:(.text+0x7a2): undefined reference to `mysql_close'
RS-MySQL.o:RS-MySQL.c:(.text+0x80f): undefined reference to
`mysql_fetch_fields'
RS-MySQL.o:RS-MySQL.c:(.text+0x823): undefined reference to
`mysql_field_count'
RS-MySQL.o:RS-MySQL.c:(.text+0xae7): undefined reference to
`mysql_next_result'
RS-MySQL.o:RS-MySQL.c:(.text+0xb0b): undefined reference to
`mysql_use_result'
RS-MySQL.o:RS-MySQL.c:(.text+0xb16): undefined reference to
`mysql_field_count'
RS-MySQL.o:RS-MySQL.c:(.text+0xbff): undefined reference to
`mysql_affected_rows'
RS-MySQL.o:RS-MySQL.c:(.text+0xd27): undefined reference to
`mysql_fetch_row'
RS-MySQL.o:RS-MySQL.c:(.text+0xd3d): undefined reference to
`mysql_fetch_lengths'
RS-MySQL.o:RS-MySQL.c:(.text+0xf2e): undefined reference to `mysql_errno'
RS-MySQL.o:RS-MySQL.c:(.text+0x1093): undefined reference to `mysql_errno'
RS-MySQL.o:RS-MySQL.c:(.text+0x109e): undefined reference to `mysql_error'
RS-MySQL.o:RS-MySQL.c:(.text+0x1114): undefined reference to
`mysql_fetch_row'
RS-MySQL.o:RS-MySQL.c:(.text+0x1121): undefined reference to
`mysql_free_result'
RS-MySQL.o:RS-MySQL.c:(.text+0x11f0): undefined reference to `mysql_query'
RS-MySQL.o:RS-MySQL.c:(.text+0x1200): undefined reference to
`mysql_use_result'
RS-MySQL.o:RS-MySQL.c:(.text+0x120b): undefined reference to
`mysql_field_count'
RS-MySQL.o:RS-MySQL.c:(.text+0x128f): undefined reference to `mysql_query'
RS-MySQL.o:RS-MySQL.c:(.text+0x12ac): undefined reference to `mysql_error'
RS-MySQL.o:RS-MySQL.c:(.text+0x133c): undefined reference to
`mysql_affected_rows'
RS-MySQL.o:RS-MySQL.c:(.text+0x1539): undefined reference to
`mysql_get_client_info'
RS-MySQL.o:RS-MySQL.c:(.text+0x172d): undefined reference to
`mysql_get_host_info'
RS-MySQL.o:RS-MySQL.c:(.text+0x174b): undefined reference to
`mysql_get_server_info'
RS-MySQL.o:RS-MySQL.c:(.text+0x176d): undefined reference to
`mysql_get_proto_info'
RS-MySQL.o:RS-MySQL.c:(.text+0x177c): undefined reference to
`mysql_thread_id'
RS-MySQL.o:RS-MySQL.c:(.text+0x23db): undefined reference to
`mysql_fetch_row'
RS-MySQL.o:RS-MySQL.c:(.text+0x23fd): undefined reference to `mysql_errno'
RS-MySQL.o:RS-MySQL.c:(.text+0x252a): undefined reference to
`mysql_fetch_lengths'
RS-MySQL.o:RS-MySQL.c:(.text+0x28fd): undefined reference to
`mysql_insert_id'
RS-MySQL.o:RS-MySQL.c:(.text+0x29cd): undefined reference to
`mysql_real_escape_string'
RS-MySQL.o:RS-MySQL.c:(.text+0x2a7a): undefined reference to
`mysql_get_client_info'
RS-MySQL.o:RS-MySQL.c:(.text+0x2ab8): undefined reference to
`mysql_get_client_version'
RS-MySQL.o:RS-MySQL.c:(.text+0x2afc): undefined reference to
`mysql_server_init'
RS-MySQL.o:RS-MySQL.c:(.text+0x2b01): undefined reference to
`mysql_get_client_version'
RS-MySQL.o:RS-MySQL.c:(.text+0x2b29): undefined reference to
`mysql_get_client_info'
RS-MySQL.o:RS-MySQL.c:(.text+0x2b69): undefined reference to
`mysql_server_end'
collect2: ld returned 1 exit status
ERROR: compilation failed for package 'RMySQL'
* removing 'C:/Users/sgraves/Rpkgs/RMySQL/RMySQL.Rcheck/RMySQL'
______________________________________________
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
______________________________________________
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
