On 10/25/2010 03:21 AM, Prof Brian Ripley wrote: > Biobase is not self-contained so I cannot easily test it, but as far as > I know this is now resolved.
Thank you it is. Martin > > On Sun, 24 Oct 2010, Martin Morgan wrote: > >> If I try to build a package with a vignette >> >> R CMD build Biobase >> >> I see >> >> * checking for file 'Biobase/DESCRIPTION' ... OK >> * preparing 'Biobase': >> * checking DESCRIPTION meta-information ... OK >> * cleaning src >> * installing the package to re-build vignettes >> * creating vignettes ... OK >> * cleaning src >> Error in setwd(pkgname) : cannot change working directory >> Execution halted >> >> This is because prepare_pkg invoked at tools/R/build.R:605 changes the >> directory (e.g., from /tmp/RtmprGGHhU/Rbuild257d6d93 to >> /tmp/RtmprGGHhU/Rbuild257d6d93/Biobase), in turn because the on.exit at >> build.R:223 is usurped by on.exit at build.R:256/259. >> >> Martin >> -- >> Computational Biology >> Fred Hutchinson Cancer Research Center >> 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 >> >> Location: M1-B861 >> Telephone: 206 667-2793 >> > -- Computational Biology Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: M1-B861 Telephone: 206 667-2793 ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
