On 09/06/2010 10:00 PM, Dario Strbenac wrote:
> Hello,
>
> I've been attempting to make a generic method that dispatches on the first
> argument, which can be either an S3 or an S4 class. This is as far as I've
> gotten. Any suggestions about what to try next ?
>
> library(aroma.affymetrix)
> library(GenomicRanges)
>
> setGeneric("analyse", function(x, y, ...) standardGeneric("analyse"))
>
> setMethodS3("analyse", "AffymetrixCelSet", function(x, y, z, ...)
> {
> x;
> UseMethod("analyse")
> }
> )
>
> setGeneric("analyse")
>
> setMethod("analyse", "GRangesList", function(x, y, a, b, c)
> {
> x;
> }
> )
I think (no testing on my end) you want
setOldClass("AffymetrixCelSet")
setGeneric("analyse", function(x, y, ...) standardGeneric("analyse"))
setMethod(analyse, "AffymetrixCelSet", function(x, y, z, ...)
{
cat("AffymetrixCelSet\n")
x
})
setMethod(analyse, "GRangesList", function(x, y, a, b, c)
{
cat("GRangesList\n")
x
})
and then by way of reproducible example
> x = analyse(structure(list(), class="AffymetrixCelSet"))
AffymetrixCelSet
> y = analyse(GRangesList())
GRangesList
Martin
>
> Thanks,
> Dario.
>
> --------------------------------------
> Dario Strbenac
> Research Assistant
> Cancer Epigenetics
> Garvan Institute of Medical Research
> Darlinghurst NSW 2010
> Australia
>
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