Hi, there seems to be a possible bug in callNextMethod in conjunction with the [-operator.
Relevant info, minimal example and sessionInfo follow below: ############################### setClass("foo", representation = representation(a = "numeric")) setClass("bar", contains = "foo") setMethod( f = "[", signature = signature("foo"), def = function(x,i,j,...,drop=TRUE) { cat("drop in foo-[ :", drop, "\n") return(1) } ) setMethod( f = "[", signature = signature("bar"), def = function(x,i,j,...,drop=TRUE) { cat("drop in bar-[ :", drop, "\n") # we lose the value of drop here, when the call gets dispatched to the super method by callNextMethod callNextMethod() } ) x <- new("foo") x[1, drop=FALSE] # drop in foo-[ : FALSE y <- new("bar") y[1, drop=FALSE] # drop in bar-[ : FALSE # drop in foo-[ : TRUE ############################### #?callNextMethod #The statement that the method is called with the current arguments is more precisely as follows. Arguments that were missing in the current call are still missing (remember that "missing" is a valid class in a method signature). For a formal argument, say x, that appears in the original call, there is a corresponding argument in the next method call equivalent to x = x. In effect, this means that the next method sees the same actual arguments, but arguments are evaluated only once. ############################### #S3 gets this right: '[.foo' <- function(x, i, j, ..., drop=TRUE) { cat("drop in foo-[ :", drop, "\n") } '[.bar' <- function(x, i, j, ..., drop=TRUE) { cat("drop in bar-[ :", drop, "\n") NextMethod() } x <- 1 class(x) <- c("bar", "foo") x[1, drop=FALSE] # drop in bar-[ : FALSE # drop in foo-[ : FALSE ############################### > sessionInfo() R version 2.11.0 Under development (unstable) (2010-01-12 r50970) i386-pc-mingw32 locale: [1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C [5] LC_TIME=German_Germany.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_2.11.0 ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel