Paul, On Nov 26, 2009, at 9:03 PM, Homer Paul Benton wrote:
> I'm currently using > > gcc --version > i686-apple-darwin8-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5564) That is the wrong compiler - it's a Leopard compiler (Xcode 3.1/3.1.1 to be precise - see that it says darwin8 which is even 10.4 = Tiger!). Your Xcode seems to be seriously messed up -- I'd strongly recommend re-installing all Xcode 3.2 (run sudo gfortran-uninstall before you start) and Fortran (either the CRAN version or the Snow Leopard(!!) version from Tools). > Copyright (C) 2007 Free Software Foundation, Inc. > This is free software; see the source for copying conditions. There is NO > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. > > sh-3.2# gfortran --version > GNU Fortran (GCC) 4.2.1 (Apple Inc. build 5564) > Copyright (C) 2007 Free Software Foundation, Inc. > > GNU Fortran comes with NO WARRANTY, to the extent permitted by law. > You may redistribute copies of GNU Fortran > under the terms of the GNU General Public License. > For more information about these matters, see the file named COPYING > > > and xcode 3.2 (1610) > > At the risk of sounding stupid, I compiled the netCDF library and the > compiliers seemed happy for that. ?!?! > NetCDF doesn't use anything from the system so even wrong compilers won't throw it off. Cheers, Simon > Cheers, > > Paul > > I downloaded and 'installed' the > > On 27 Nov 2009, at 00:54, Simon Urbanek wrote: > >> Paul, >> >> at a first glance that seems like an issue in your system to me since >> the errors come from system headers and not from our code. Which >> compilers are you using and which Xcode version? >> >> Cheers, >> Simon >> >> >> On Nov 26, 2009, at 1:16 PM, Homer Paul Benton wrote: >> >>> Dear R-gurus, >>> >>> I'm trying to compile R on my new mac. It's snow leopard. So far >>> I've seemed to be doing pretty well. I've looked at >>> >>> http://cran.r-project.org/bin/macosx/tools/ >>> >>> http://r.research.att.com/exp/ >>> >>> http://r.research.att.com/building.html >>> >>> http://r.research.att.com/tools/ >>> >>> All of which have been very helpful. Looking at the threads I've got >>> around some X11 issues that stopped the configure script working but >>> now when I excute make I get the error below. Any ideas? >>> >>> Thanks in advance, >>> >>> Paul >>> >>> R is now configured for i386-apple-darwin10.2.0 >>> >>> Source directory: . >>> Installation directory: /Library/Frameworks >>> >>> C compiler: gcc -arch x86_64 -std=gnu99 -g -O2 >>> Fortran 77 compiler: gfortran -arch x86_64 -g -O2 >>> >>> C++ compiler: g++ -arch x86_64 -g -O2 >>> Fortran 90/95 compiler: gfortran -arch x86_64 -g -O2 >>> Obj-C compiler: gcc -arch x86_64 -g -O2 >>> >>> Interfaces supported: X11, aqua, tcltk >>> External libraries: readline, BLAS(vecLib), LAPACK(in blas), >>> ICU >>> Additional capabilities: NLS >>> Options enabled: framework, R profiling, Java >>> >>> Recommended packages: yes >>> >>> sh-3.2# echo "./configure SHELL='/bin/bash' r_arch=x86_64 CC="gcc - >>> arch x86_64 -std=gnu99" CXX="g++ -arch x86_64" OBJC="gcc -arch >>> x86_64" F77="gfortran -arch x86_64" FC="gfortran -arch x86_64" -- >>> with-system-zlib --with-blas='-framework vecLib' --with-lapack --x- >>> includes='-I/usr/X11/include/X11' --x-libraries='-L/usr/X11/lib' >>> X_LIBS=-L/usr/X11/lib" > ~/R/compileR.txt >>> >>> >>> sh-3.2# make >>> make[1]: Nothing to be done for `R'. >>> make[1]: Nothing to be done for `R'. >>> make[2]: Nothing to be done for `R'. >>> ..... >>> ..... etc >>> building package 'tools' >>> all.R is unchanged >>> make[6]: `Makedeps' is up to date. >>> ../../../../library/tools/libs/x86_64/tools.so is unchanged >>> building package 'utils' >>> all.R is unchanged >>> make[4]: Nothing to be done for `iconvlist'. >>> building package 'grDevices' >>> all.R is unchanged >>> ../../../library/grDevices/R/grDevices is unchanged >>> gcc -arch x86_64 -I../../../../include -I../../../../include/x86_64 - >>> I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/ >>> local/include -fPIC -g -O2 -c qdCocoa.m -o qdCocoa.o >>> In file included from /System/Library/Frameworks/ >>> Foundation.framework/Headers/NSCharacterSet.h:8, >>> from /System/Library/Frameworks/Foundation.framework/ >>> Headers/Foundation.h:15, >>> from /System/Library/Frameworks/Cocoa.framework/ >>> Headers/Cocoa.h:12, >>> from qdCocoa.h:39, >>> from qdCocoa.m:24: >>> /System/Library/Frameworks/Foundation.framework/Headers/NSString.h: >>> 278: error: format string argument follows the args to be formatted >>> /System/Library/Frameworks/Foundation.framework/Headers/NSString.h: >>> 280: error: format string argument follows the args to be formatted >>> In file included from /System/Library/Frameworks/ >>> Foundation.framework/Headers/Foundation.h:25, >>> from /System/Library/Frameworks/Cocoa.framework/ >>> Headers/Cocoa.h:12, >>> from qdCocoa.h:39, >>> from qdCocoa.m:24: >>> /System/Library/Frameworks/Foundation.framework/Headers/ >>> NSException.h:62: error: format string argument follows the args to >>> be formatted >>> qdCocoa.m: In function '+[QuartzCocoaView >>> quartzWindowWithRect:andInfo:]': >>> qdCocoa.m:90: warning: class 'QuartzCocoaView' does not implement >>> the 'NSWindowDelegate' protocol >>> make[5]: *** [qdCocoa.o] Error 1 >>> make[4]: *** [mksrc] Error 1 >>> make[3]: *** [all] Error 2 >>> make[2]: *** [R] Error 1 >>> make[1]: *** [R] Error 1 >>> make: *** [R] Error 1 >>> ______________________________________________ >>> R-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/r-devel >>> >>> >> > > > ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
