Hi Christos -- Christos Hatzis wrote: > > Hello, > > After running R CMD check on my package I received the following error on > package dependencies: > > * using log directory 'C:/z-zBackup/Nuvera Bio on > Iatros01/Development/RPackages/nvNormalize/nvNormalize.Rcheck' > * using R version 2.9.1 (2009-06-26) > * using session charset: ISO8859-1 > * checking for file 'nvNormalize/DESCRIPTION' ... OK > * checking extension type ... Package > * this is package 'nvNormalize' version '1.0' > * checking package name space information ... OK > * checking package dependencies ... ERROR > Namespace dependencies not required: > affy affyio hgu133acdf hgu133plus2cdf simpleaffy
this confusingly worded message is saying that these packages are import'ed by NAMESPACE, but not listed in Imports: or Depends: in DESCRIPTION, but... > > See the information on DESCRIPTION files in the chapter 'Creating R > packages' of the 'Writing R Extensions' manual. > > I've looked at the manual but cannot figure out if the problem is in the way > I have specified dependencies in NAMESPACE or DESCRIPTION. It appears that > dependecies need to be specified in both. > These two files are shown below. > > ------------------------------ > NAMESPACE > > export(nv.batch.normalize, norm.options, combine.norm.esets, > subset.norm.eset, update.sampleNames) > > import(affy, simpleaffy, hgu133acdf, hgu133plus2cdf) > importFrom(affyio, read.celfile, read.celfile.header) > > DESCRIPTION > ... > Depends: R (>= 2.5.0), Biobase > Imports: affy, affyio, simpleaffy, hgu133acdf, hgu133plus2cdf I don't see anything wrong with what you list here. Perhaps the file is malformed, or contains non-ASCII characters (tools::showNonASCII might help) or is otherwise not processed properly (base::read.dcf)? In addition I am not sure of the consequences of using charset ISO8859-1. Martin > -------------------------------- > > I'd appreciate any help. > Thank you. > > -Christos > > Christos Hatzis, Ph.D. > Nuvera Biosciences, Inc. > > ______________________________________________ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
