I've converted the bdsmatrix package (used by coxme) to the newer style of
S4, and uploaded it. It is in the pkg directory of survival, on r-forge.
I'm stuck on something that is almost certainly a namespace issue. I've
borrowed liberally from Matrix (a big help) and read the documentation, and
just upgraded to 2.8.1 - but still stuck.
All the tests work when I run them "by hand", but tests/gchol2.R fails
when run from R CMD check. The failure looks a lot like a method for
setMethod('diag', 'gchol')
is not being found.
The NAMESPACE file exports diag, along with several other methods that
do work. Any help would be appreciated.
Terry Therneau
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