Dear Dr. Ripley,
Thanks for your response. I'm running Xcode Tools 3.0, and the
latest Xquartz X11 (Xquartz 2.2.1, xorg-server 1.3.0-apple20) as has been
maintained by Apple's X11 mailing list (see http://xquartz.macosforge.org/ )
...the CFLAGS included were the same ones I was passing gfortran for
the lapack-3.1.1 and ATLAS builds, though at your suggestion I left them off
in favor of those listed at
https://stat.ethz.ch/pipermail/r-sig-mac/2005-February/001641.html for use
on the G5. I moved /sw last in my $PATH to ensure that I'm actually using
Apple's gcc, properly included /usr/local/lib/libptcblas.a, and used
--disable-R-framework instead of --without (oops). After fixing these
foolish errors, R compiles and installs correctly, and runs! Only 5-10%
faster, but hey.
Many thanks. Of course, if you are interested in debugging the error
based on the earlier compile (i.e., the one that told me to email this
list), I am happy to help.
--Adam
On Fri, 16 May 2008, Prof Brian Ripley wrote:
What version are your Xcode tools? What X11 do you have installed (I see
/sw/include in your path, and that is not normally needed)?
Although configure says to report here, it is reporting a bug in your OS, not
in R. There will be more information in your config.log, (and perhaps some
of it useful).
Where did all those gcc flags come from? I don't see them in 'R Installation
and Administration'. Perhaps leaving them off might solve the problem.
On Fri, 16 May 2008, [EMAIL PROTECTED] wrote:
Hi,
I'm attempting to compile R 2.7.0 on my G5, which is running OSX
10.5.2. Yes, I know there is a precompiled binary, but my experience has
shown that if I hand-compile ATLAS on my machine and then link R against it
when compiling, R runs faster, hence me compiling it myself.
Anyway, I have this set of errors:
checking X11/Intrinsic.h usability... no
checking X11/Intrinsic.h presence... yes
configure: WARNING: X11/Intrinsic.h: present but cannot be compiled
configure: WARNING: X11/Intrinsic.h: check for missing prerequisite
headers?
configure: WARNING: X11/Intrinsic.h: see the Autoconf documentation
configure: WARNING: X11/Intrinsic.h: section "Present But Cannot Be
Compiled"
configure: WARNING: X11/Intrinsic.h: proceeding with the preprocessor's
result
configure: WARNING: X11/Intrinsic.h: in the future, the compiler will take
precedence
configure: WARNING: ## ----------------------------------- ##
configure: WARNING: ## Report this to [EMAIL PROTECTED] ##
configure: WARNING: ## ----------------------------------- ##
...
checking X11/Xmu/Atoms.h usability... no
checking X11/Xmu/Atoms.h presence... yes
configure: WARNING: X11/Xmu/Atoms.h: present but cannot be compiled
configure: WARNING: X11/Xmu/Atoms.h: check for missing prerequisite
headers?
configure: WARNING: X11/Xmu/Atoms.h: see the Autoconf documentation
configure: WARNING: X11/Xmu/Atoms.h: section "Present But Cannot Be
Compiled"
configure: WARNING: X11/Xmu/Atoms.h: proceeding with the preprocessor's
result
configure: WARNING: X11/Xmu/Atoms.h: in the future, the compiler will take
precedence
configure: WARNING: ## ----------------------------------- ##
configure: WARNING: ## Report this to [EMAIL PROTECTED] ##
configure: WARNING: ## ----------------------------------- ##
...
checking tk.h usability... no
checking tk.h presence... yes
configure: WARNING: tk.h: present but cannot be compiled
configure: WARNING: tk.h: check for missing prerequisite headers?
configure: WARNING: tk.h: see the Autoconf documentation
configure: WARNING: tk.h: section "Present But Cannot Be Compiled"
configure: WARNING: tk.h: proceeding with the preprocessor's result
configure: WARNING: tk.h: in the future, the compiler will take precedence
configure: WARNING: ## ----------------------------------- ##
configure: WARNING: ## Report this to [EMAIL PROTECTED] ##
configure: WARNING: ## ----------------------------------- ##
...the command line item I pass to configure is this:
feta:R-2.7.0> ./configure --prefix=/usr/local --with-x
--without-R-framework --without-aqua
--with-blas="/usr/local/lib/libptf77blas.a /usr/local/lib/libatlas.a"
--with-lapack="/usr/local/lib/liblapack.a /usr/local/lib/libptf77blas.a
/usr/local/lib/libatlas.a" CFLAGS="-maltivec -mabi=altivec -mtune=970
-faltivec -O3" CXXFLAGS="-maltivec -mabi=altivec -mtune=970 -faltivec -O3"
...the rest of configure completes fine, though when I try to build R, I
make eventually ends up failing in this manner:
gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/sw/include
-I/usr/
local/include -DHAVE_CONFIG_H -fPIC -maltivec -mabi=altivec -mtune=970
-falti
vec -O3 -c cpoly.c -o cpoly.o
cpoly.c: In function 'fxshft':
cpoly.c:299: error: expected identifier or '(' before 'unsigned'
cpoly.c:310: error: 'test' undeclared (first use in this function)
cpoly.c:310: error: (Each undeclared identifier is reported only once
cpoly.c:310: error: for each function it appears in.)
cpoly.c:315: error: expected expression before '__attribute__'
cpoly.c:326: error: expected expression before '__attribute__'
cpoly.c:327: error: expected expression before '__attribute__'
cpoly.c:334: error: expected expression before '__attribute__'
cpoly.c:370: error: expected expression before '__attribute__'
cpoly.c: In function 'vrshft':
cpoly.c:394: error: two or more data types in declaration specifiers
cpoly.c:394: error: expected identifier or '(' before ',' token
cpoly.c:399: error: 'b' undeclared (first use in this function)
cpoly.c:439: error: expected expression before '__attribute__'
cpoly.c:440: error: expected expression before '__attribute__'
cpoly.c:459: error: expected expression before '__attribute__'
cpoly.c:460: error: expected expression before '__attribute__'
cpoly.c:461: error: expected expression before '__attribute__'
cpoly.c:462: error: expected expression before '__attribute__'
cpoly.c: At top level:
cpoly.c:476: error: expected ';', ',' or ')' before 'unsigned'
cpoly.c:498: error: two or more data types in declaration specifiers
cpoly.c:498: error: conflicting types for 'nexth'
cpoly.c:81: error: previous declaration of 'nexth' was here
cpoly.c: In function 'nexth':
cpoly.c:498: error: parameter name omitted
cpoly.c:506: error: expected expression before '__attribute__'
make[3]: *** [cpoly.o] Error 1
make[2]: *** [R] Error 2
make[1]: *** [R] Error 1
make: *** [R] Error 1
...the one reference to a problem like this I could find via google
searches
is the post at
http://osdir.com/ml/lang.r.mac/2006-10/msg00016.html
regarding R 2.4.0, which I could not find a response to.
Any help is appreciated!
Thanks,
Adam Kramer
______________________________________________
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https://stat.ethz.ch/mailman/listinfo/r-devel
--
Brian D. Ripley, [EMAIL PROTECTED]
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
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