Ahh. I didn't notice that my fingers had used \code() inside of the example section. I've removed them, and everything seems to be working properly now.
-G > -----Original Message----- > From: [EMAIL PROTECTED] > [mailto:[EMAIL PROTECTED] Behalf Of > [EMAIL PROTECTED] > Sent: Thursday, September 01, 2005 12:23 PM > To: r-devel@stat.math.ethz.ch > Cc: [EMAIL PROTECTED] > Subject: Re: [Rd] R CMD check example problem (PR#8113) > > > [CCing to r-bugs to inform people that we have looked at it.] > > Greg, > > you sent me the example which can be reduced to an example.Rd > file that > contains the following Example section: > > > ############################ > \examples{ > # \code{} \code{} > foo <- function() > { > } > } > ############################ > > calling now > R CMD Rdconv -t example example.Rd > results in: > > > > ############################ > ### ** Examples > > # this-is-escaped-code{ > this-is-escaped-codenormal-bracket9bracket-normal > foo <- function() > normal-bracket10bracket-normal > normal-bracket10bracket-normal > ############################ > > > I do not know whether this qualifies as a bug, but for > simplicity let's say: > "Don't use \code{} in an Example section where it does not make sense > anyway." > > Best, > Uwe > > > > > > > Warnes, Gregory R wrote: > > > > >>-----Original Message----- > >>From: Uwe Ligges [mailto:[EMAIL PROTECTED] > >>Sent: Thursday, September 01, 2005 8:57 AM > >>To: Warnes, Gregory R > >>Subject: Re: [Rd] R CMD check example problem (PR#8113) > >> > >> > >>Greg, > >> > >>the attachment is not appended on the forwarded message to > >>R-devel, and > >>I would like to take a look, can you send it in a private > >>message, please? > >> > >>Best, > >>Uwe > >> > >>Warnes, Gregory R wrote: > >> > >> > >>>[Automatic forwarding from R-bugs failed. This message has > >> > >>been manually > >> > >>>forwarded.] > >>> > >>>Hi all! > >>> > >>>I'm trying to add Thomas Lumley's defmacro() function Lumley T. > >>>"Programmer's Niche: Macros in {R}", R News, 2001, Vol 1, > >>> No. 3, pp 11--13, > >> > >>\url{http://CRAN.R-project.org/doc/Rnews/} to the gtools > >> > >>>package (provided that Thomas gives his OK). And I've > >> > >>encountered an error > >> > >>>in how R CMD check is extracting the example code I have in > >> > >>the .Rd file. > >> > >>>The example section contains the lines > >>> > >>> # An equivalent function is somewhat messier, since it > must either > >>>explicitly > >>> # construct the y axis label, duplicating some of the > >> > >>work of the plot > >> > >>> # function: > >>> plotit <- function( df, var, col="red", title="" ) > >>> { > >>> dname <- deparse(substitute(df)) > >>> vname <- deparse(substitute(var)) > >>> plot( df[[vname]] ~ df$Grp, type="b", col=col, title=title, > >>> ylab=paste( dname, "$", vname, sep='' ) ) > >>> } > >>> # or we explicitly construct the call and then call eval. > >> > >> The code for > >> > >>> # the latter approach is # omiited since this is quite messy and > >>> # requires a lot of work. > >>> > >>>which is getting extracted for testing into > >> > >>gtools.Rcheck/gtools-Ex.R as > >> > >>> # An equivalent function is somewhat messier, since it > must either > >>>explicitly > >>> # construct the y axis label, duplicating some of the > >> > >>work of the plot > >> > >>> # function: > >>> plotit <- function( df, var, col="red", title="" > >>>)normal-bracket43bracket-normal > >>> dname <- deparse(substitute(df)) > >>> vname <- deparse(substitute(var)) > >>> plot( df[[vname]] ~ df$Grp, type="b", col=col, title=title, > >>> ylab=paste( dname, "$", vname, sep='' ) ) > >>> normal-bracket43bracket-normal > >>> # or we explicitly construct the call and then call eval. > >> > >> The code for > >> > >>> # the latter approach is # omiited since this is quite messy and > >>> # requires a lot of work. > >>> > >>>Note that the opening and closing curly brakkets are > >> > >>converted to the string > >> > >>>"normal-bracket43bracket-normal". [I assume that this is happeing > >>>somewhere to check for brace-matches, and isn't being > >> > >>properly undone.] As > >> > >>>a consequence, R CMD check is failing: > >>> > >>> > # An equivalent function is somewhat messier, since it > >> > >>must either > >> > >>>explicitly > >>> > # construct the y axis label, duplicating some of the > >> > >>work of the plot > >> > >>> > # function: > >>> > plotit <- function( df, var, col="red", title="" > >>>)normal-bracket43bracket-normal > >>> > dname <- deparse(substitute(df)) > >>> > vname <- deparse(substitute(var)) > >>> > plot( df[[vname]] ~ df$Grp, type="b", col=col, title=title, > >>> + ylab=paste( dname, "$", vname, sep='' ) ) > >>> Error in df[[vname]] : object is not subsettable > >>> Execution halted > >>> > >>>I've checked, and this occurs under R-2.1.0, R-2.1.1, and today's > >>>R-2.2.0-devel on my > >>> > >>> platform i686-pc-linux-gnu > >>> arch i686 > >>> os linux-gnu > >>> system i686, linux-gnu > >>> > >>>I'm attaching the probelmatic .Rd file to this email. > >>> > >>> <<defmacro.Rd>> > >>> > >>>(For the record, I've simply enclosed the problematic > >> > >>section in \dontrun as > >> > >>>a workaround.) > >>> > >>>-Greg > >>> > >>> > >>> > >>>Gregory R. Warnes, Ph.D. > >>>Associate Director, Non-Clinical Statistics > >>>Pfizer Global Research and Development > >>> > >>> > >>> > >>>LEGAL NOTICE > >>>Unless expressly stated otherwise, this message is > >> > >>confidential and may be privileged. It is intended for the > >>addressee(s) only. Access to this E-mail by anyone else is > >>unauthorized. If you are not an addressee, any disclosure or > >>copying of the contents of this E-mail or any action taken > >>(or not taken) in reliance on it is unauthorized and may be > >>unlawful. If you are not an addressee, please inform the > >>sender immediately. > >> > >>> > >>> > >>-------------------------------------------------------------- > >>---------- > >> > >>>______________________________________________ > >>>R-devel@r-project.org mailing list > >>>https://stat.ethz.ch/mailman/listinfo/r-devel > >> > >> > >> > > > > ______________________________________________ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > > LEGAL NOTICE\ Unless expressly stated otherwise, this messag...{{dropped}} ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
