Xavier de Gaye added the comment:
The problem is that Makefile and Modules/getpath.c are not consistent:
* Makefile uses $(LIBDIR)/python$(VERSION)/lib-dynload as the location of the
installed shared libraries and in this issue, it happens that LIBDIR is not
${exec_prefix}/lib but is ${exec_prefix}/lib64 instead.
* Py_GetPath() in Modules/getpath.c uses the concatenation of EXEC_PREFIX with
"lib/python", VERSION and "lib-dynload" to construct the corresponding sys.path
entry when falling back to using the EXEC_PREFIX preprocessor variable.
Another problem may be that with this issue, Py_GetPath() constructs the string
"/some/path/to/install/lib/lib-dynload" missing entirely the python$(VERSION)
component part (as shown by sys.path in the interpreter).
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<http://bugs.python.org/issue26971>
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