Dear useRs,
update math/R 3.5.1 -> 3.5.2
- Bump SO_VERSION minor as check_sym
(/usr/src/lib/check_sym libR.so.34.1 libR.so.34.2) reports:
No dynamic export changes
External reference changes:
added:
fstat
pthread_equal
pthread_kill
pthread_self
I am not sure it is strictly necessary here but it does not hurt.
- Removed "curses fribidi" from WANTLIB as "make port-lib-depends-check"
reports them as extra. There are still
R-3.5.2(math/R):
Extra: c++.2 c++abi.0
but I think these should not be removed?
- The `tan(1+1000i)` test still fails (see
https://marc.info/?l=openbsd-tech&m=150737856618497&w=2).
OK?
Best regards,
Ingo
Index: Makefile
===================================================================
RCS file: /cvs/ports/math/R/Makefile,v
retrieving revision 1.104
diff -u -p -r1.104 Makefile
--- Makefile 14 Nov 2018 20:48:21 -0000 1.104
+++ Makefile 21 Dec 2018 12:03:22 -0000
@@ -1,10 +1,9 @@
# $OpenBSD: Makefile,v 1.104 2018/11/14 20:48:21 sthen Exp $
COMMENT= powerful math/statistics/graphics language
-DISTNAME= R-3.5.1
-REVISION= 2
+DISTNAME= R-3.5.2
-SO_VERSION= 34.1
+SO_VERSION= 34.2
.for _lib in R Rblas Rlapack
SHARED_LIBS += ${_lib} ${SO_VERSION}
.endfor
@@ -18,7 +17,7 @@ MAINTAINER= Ingo Feinerer <feinerer@logi
PERMIT_PACKAGE_CDROM= Yes
WANTLIB += ${COMPILER_LIBCXX} ${MODTK_WANTLIB}
-WANTLIB += ICE SM X11 Xext Xmu Xss Xt bz2 c cairo crypto curl curses fribidi
+WANTLIB += ICE SM X11 Xext Xmu Xss Xt bz2 c cairo crypto curl
WANTLIB += glib-2.0 gobject-2.0 iconv icui18n icuuc intl jpeg lzma m
WANTLIB += nghttp2 pango-1.0 pangocairo-1.0 pcre pcre2-8 png readline ssl tiff
z
Index: distinfo
===================================================================
RCS file: /cvs/ports/math/R/distinfo,v
retrieving revision 1.40
diff -u -p -r1.40 distinfo
--- distinfo 3 Jul 2018 21:46:50 -0000 1.40
+++ distinfo 21 Dec 2018 12:03:22 -0000
@@ -1,2 +1,2 @@
-SHA256 (R-3.5.1.tar.gz) = BGO/9e6g89k/oHH3nBjQmTh4/U8uGK5s8iwWOdEUV+0=
-SIZE (R-3.5.1.tar.gz) = 29812849
+SHA256 (R-3.5.2.tar.gz) = 5T2MPPIPK416nBYxtvaiKHRQb7OSA0dYs7s0HFhsW2I=
+SIZE (R-3.5.2.tar.gz) = 30186438
Index: patches/patch-configure
===================================================================
RCS file: /cvs/ports/math/R/patches/patch-configure,v
retrieving revision 1.35
diff -u -p -r1.35 patch-configure
--- patches/patch-configure 24 Apr 2018 17:13:38 -0000 1.35
+++ patches/patch-configure 21 Dec 2018 12:03:22 -0000
@@ -3,7 +3,7 @@ $OpenBSD: patch-configure,v 1.35 2018/04
Index: configure
--- configure.orig
+++ configure
-@@ -38967,8 +38967,8 @@ fi
+@@ -39135,8 +39135,8 @@ fi
fi
if test "${have_zlib}" = yes; then
@@ -14,7 +14,7 @@ Index: configure
if ${r_cv_header_zlib_h+:} false; then :
$as_echo_n "(cached) " >&6
else
-@@ -38983,7 +38983,7 @@ else
+@@ -39151,7 +39151,7 @@ else
#include <zlib.h>
int main() {
#ifdef ZLIB_VERNUM
Index: pkg/PLIST
===================================================================
RCS file: /cvs/ports/math/R/pkg/PLIST,v
retrieving revision 1.40
diff -u -p -r1.40 PLIST
--- pkg/PLIST 4 Sep 2018 12:46:15 -0000 1.40
+++ pkg/PLIST 21 Dec 2018 12:03:22 -0000
@@ -1386,6 +1386,9 @@ lib/R/library/survival/doc/adjcurve.pdf
lib/R/library/survival/doc/compete.R
lib/R/library/survival/doc/compete.Rnw
lib/R/library/survival/doc/compete.pdf
+lib/R/library/survival/doc/concordance.R
+lib/R/library/survival/doc/concordance.Rnw
+lib/R/library/survival/doc/concordance.pdf
lib/R/library/survival/doc/index.html
lib/R/library/survival/doc/multi.R
lib/R/library/survival/doc/multi.Rnw
