Source: openchemlib
Version: 2023.1.1+dfsg-1
Severity: normal
Tags: ftbfs
Usertags: default-java25
Dear Maintainers,
The package openchemlib ftbfs with default Java 25.
The relevant part of the build log:
---------------
[INFO]
[INFO] --- compiler:3.13.0:compile (default-compile) @ openchemlib ---
[INFO] Recompiling the module because of changed source code.
[INFO] Compiling 928 source files with javac [debug target 1.8] to
target/classes
[INFO]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/jfx/gui/misc/ClipboardHelper.java:
Some input files use or override a deprecated API.
[INFO]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/jfx/gui/misc/ClipboardHelper.java:
Recompile with -Xlint:deprecation for details.
[INFO]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/fx/FXComboBox.java:
Some input files use unchecked or unsafe operations.
[INFO]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/fx/FXComboBox.java:
Recompile with -Xlint:unchecked for details.
[INFO] -------------------------------------------------------------
[WARNING] COMPILATION WARNING :
[INFO] -------------------------------------------------------------
[WARNING] bootstrap class path is not set in conjunction with -source 8
not setting the bootstrap class path may lead to class files that cannot run
on JDK 8
--release 8 is recommended instead of -source 8 -target 1.8 because it sets
the bootstrap class path automatically
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/HeaderPaintHelper.java:[41,21]
java.security.AccessControlException in java.security has been deprecated and
marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/util/datamodel/IntVec.java:[1083,40]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/shredder/MoleculeShredder.java:[257,43]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/shredder/MoleculeShredder.java:[293,91]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/shredder/MoleculeShredder.java:[308,45]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/shredder/MoleculeShredder.java:[328,75]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/shredder/MoleculeShredder.java:[329,77]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/editor/GenericEditorArea.java:[2153,84]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/editor/GenericEditorArea.java:[2187,102]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/TextDrawingObject.java:[148,71]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MarkushStructure.java:[135,40]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MarkushStructure.java:[171,44]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/calc/Matrix.java:[644,28]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/calc/Matrix.java:[1393,20]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/calc/Matrix.java:[2810,20]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MolfileParser.java:[1110,35]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MolfileParser.java:[1110,65]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MolfileParser.java:[1117,35]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MolfileParser.java:[1117,65]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MolfileParser.java:[1121,81]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MolfileParser.java:[1126,81]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/Molecule3D.java:[386,45]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/Molecule3D.java:[388,45]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/io/DWARFileParser.java:[294,45]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/io/DWARFileParser.java:[352,70]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/prediction/CLogPPredictor.java:[300,74]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/prediction/CLogPPredictor.java:[302,62]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/prediction/CLogPPredictor.java:[302,82]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/prediction/CLogPPredictor.java:[304,62]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/prediction/CLogPPredictor.java:[304,82]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/util/SizeOf.java:[58,24]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/util/SizeOf.java:[76,20]
runFinalization() in java.lang.Runtime has been deprecated and marked for
removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/io/StringReadChannel.java:[153,21]
finalize() in java.lang.Object has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/JDrawArea.java:[2233,84]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/JDrawArea.java:[2268,102]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/properties/complexity/ExhaustiveFragmentsStatistics.java:[284,21]
finalize() in java.lang.Object has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/properties/complexity/ExhaustiveFragmentsStatistics.java:[293,22]
finalize() in java.lang.Object has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/ExtendedMoleculeFunctions.java:[628,48]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/ExtendedMoleculeFunctions.java:[755,31]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/ExtendedMoleculeFunctions.java:[757,30]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/ExtendedMoleculeFunctions.java:[763,39]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/ExtendedMoleculeFunctions.java:[771,56]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/ExtendedMoleculeFunctions.java:[772,55]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/ExtendedMoleculeFunctions.java:[773,54]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/StructureSearch.java:[340,66]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/util/BinaryEncoder.java:[158,21]
finalize() in java.lang.Object has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/forcefield/mmff/SortedPair.java:[62,16]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/forcefield/mmff/SortedPair.java:[62,44]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/AtomTypeList.java:[107,36]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/AtomTypeList.java:[108,31]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/AtomTypeList.java:[262,35]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/PeriodicTable.java:[195,46]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/calc/BinarySOM.java:[78,49]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/calc/MatrixFunctions.java:[644,25]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/calc/MatrixFunctions.java:[645,25]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/smile/stat/distribution/GaussianDistribution.java:[162,25]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/reaction/ReactionSearch.java:[466,66]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/io/ODEFileParser.java:[196,53]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/forcefield/mmff/Vector3.java:[182,16]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/forcefield/mmff/Vector3.java:[183,15]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/forcefield/mmff/Vector3.java:[184,15]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/optimization/Lnsrch.java:[152,45]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/HeaderPaintHelper.java:[52,24]
java.security.AccessControlException in java.security has been deprecated and
marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/UniqueStringList.java:[66,39]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/properties/complexity/MolecularComplexityCalculator.java:[72,21]
finalize() in java.lang.Object has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/properties/complexity/MolecularComplexityCalculator.java:[74,22]
finalize() in java.lang.Object has been deprecated and marked for removal
[INFO] 70 warnings
[INFO] -------------------------------------------------------------
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] /<<PKGBUILDDIR>>/src/main/java/smile/math/Math.java:[2147,48]
unreported exception java.lang.InterruptedException; must be caught or declared
to be thrown
[INFO] 1 error
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 9.016 s
[INFO] Finished at: 2025-06-11T20:29:02Z
---------------
-- System Information:
Debian Release: trixie/sid
APT prefers plucky-updates
APT policy: (500, 'plucky-updates'), (500, 'plucky-security'), (500, 'plucky')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 6.14.0-22-generic (SMP w/32 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE=en
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
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