Correct, I tried a few different python versions and mpi versions, conda is
providing the external dependencies. Maybe it wrongly points to some base
builds instead of the specific environment I set up.
Best,
Sophie
On Jun 6, 2025 7:12 PM, Barry Smith <bsm...@petsc.dev> wrote:
Send configure.log
I assume you tried rerunning a few times? It seems like possibly a flaky
filesystem problem.
Barry
On Jun 6, 2025, at 6:56 PM, Blondel, Sophie via petsc-users
<petsc-users@mcs.anl.gov> wrote:
Hi,
I am getting an error when trying to install PETSc with
--download-f2cblaslapack on Linux:
=============================================================================================
Installing F2CBLASLAPACK; this may take several minutes
=============================================================================================
*********************************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
details):
---------------------------------------------------------------------------------------------
Error moving
/home/sophie/Workspace/xolotl-stable-source/external/petsc/arch-linux-c-opt/externalpackages/f2cblaslapack-3.8.0.q2
libraries
With the error in configure.log (which is accurate, the file is not present in
the folder):
=============================================================================================
Installing F2CBLASLAPACK; this may take several minutes
=============================================================================================
Executing: ['mkdir', '-p',
'/home/sophie/Workspace/xolotl-stable-build/external/petsc_install/lib']
Executing: ['cp', '-f', 'libf2clapack.a', 'libf2cblas.a',
'/home/sophie/Workspace/xolotl-stable-build/external/petsc_install/lib']
stdout: cp: cannot stat 'libf2clapack.a': No such file or directory
Error moving
/home/sophie/Workspace/xolotl-stable-source/external/petsc/arch-linux-c-opt/externalpackages/f2cblaslapack-3.8.0.q2
libraries: Could not execute "[['mkdir', '-p',
'/home/sophie/Workspace/xolotl-stable-build/external/petsc_install/lib'],
['cp', '-f', 'libf2clapack.a', 'libf2cblas.a',
'/home/sophie/Workspace/xolotl-stable-build/external/petsc_install/lib']]":
cp: cannot stat 'libf2clapack.a': No such file or directory
The configure command is:
./configure
--prefix=/home/sophie/Workspace/xolotl-stable-build/external/petsc_install
--with-fc=0 --with-cuda=0 --with-mpi --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-hdf5
--download-hdf5-configure-arguments=--enable-parallel --download-boost
--download-f2cblaslapack --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
The version of PETSc you are using is out-of-date, we recommend updating to the
new release
Available Version: 3.23.3 Installed Version: 3.22.2
Let me know what additional information I can provide to help identify the
issue.
Best,
Sophie
