On Thu, May 8, 2025 at 9:15 AM David Andrs <and...@gmail.com> wrote:
> Hi Juan, > > I recently bumped into a similar issue (not with PETSc). It is a general > issue with the newest macOS where a duplicate rpath prevents you from > running the binary. The info is buried in the error message when you run > the binary. I saw people "fixing" the issue by downgrading Xcode to 16.2 - > if my memory serves well. Also you can inspect your binary via `otool -l` > to check for the duplicate entries and remove them via install_name_tool > (not a solution, but a diagnosing step). So, maybe check if this is the > problem you are running into. > Thanks! I will have to remember this one. Apple keeps finding ways to make us less productive. Matt > Side note: conda environment has the same problem and users are advised to > update to the latest ld64 (from conda-forge). > > With regards, > -- > David > > > On Wed, May 7, 2025 at 10:27 PM Juan Salazar via petsc-users < > petsc-users@mcs.anl.gov> wrote: > >> Dear PETSc users, >> >> I am probably doing something dumb, but since I recently updated macOS, I >> am getting the following errors when running `make check`: dyld[19098]: >> Library not loaded: @rpath/libHYPRE-2.32.0.dylib . I am also not able to >> compile codes that previously worked with petsc because of the same issues. >> The dylib is not linked, even tough it is in the path that apparently is >> searched. >> >> Below is my configure command >> >> ./configure --with-debugging=0 --download-cmake --download-hypre >> --download-parmetis --download-metis --download-ptscotch --download-mumps >> --download-scalapack --with-precision=double --with-shared-libraries=1 >> --with-scalar-type=real --with-fc=mpifort --with-cc=mpicc --with-cxx=mpicxx >> CXX_LINKER_FLAGS=-Wl,-rpath,/opt/homebrew/lib CFLAGS="-g -O2 -fPIC" >> CXXFLAGS="-g -O2 -fPIC" FCFLAGS="-g -O2" FFLAGS="-g -O2" >> LDFLAGS="-Wl,-ld_classic -Wl,-commons,use_dylibs" MAKEFLAGS=w >> --download-bison >> >> Attached are the configure.log and make.log and check.log files. >> >> √ petsc-3.23.1 % mpifort --version >> GNU Fortran (Homebrew GCC 14.2.0_1) 14.2.0 >> Copyright (C) 2024 Free Software Foundation, Inc. >> This is free software; see the source for copying conditions. There is NO >> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR >> PURPOSE. >> >> √ petsc-3.23.1 % mpicc --version >> Apple clang version 17.0.0 (clang-1700.0.13.3) >> Target: arm64-apple-darwin24.4.0 >> Thread model: posix >> InstalledDir: >> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin >> >> √ petsc-3.23.1 % mpicxx --version >> Apple clang version 17.0.0 (clang-1700.0.13.3) >> Target: arm64-apple-darwin24.4.0 >> Thread model: posix >> InstalledDir: >> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin >> >> macOS Sequoia 15.4.1 (24E263) >> >> Any help is much appreciated, >> Juan S. >> >> >> >> >> >> -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener https://urldefense.us/v3/__https://www.cse.buffalo.edu/*knepley/__;fg!!G_uCfscf7eWS!foYFpXpWd_2fpOCFImBaX5XJCne4IvL_yUutmn2DFXcM7OgZ5IwCQNDVbRbCQBgFuwkIs1sYAKeY7pD4vxvO$ <https://urldefense.us/v3/__http://www.cse.buffalo.edu/*knepley/__;fg!!G_uCfscf7eWS!foYFpXpWd_2fpOCFImBaX5XJCne4IvL_yUutmn2DFXcM7OgZ5IwCQNDVbRbCQBgFuwkIs1sYAKeY7hVvkDoD$ >
