> *[0]PETSC ERROR: Could not locate solver package superlu for factorization
Here you are requesting 'superlu' - instead of 'superlu_dist' - hence this error. Satish On Sun, 19 Apr 2020, Mark Adams wrote: > > > > > > > > > > --download-superlu --download-superlu_dist > > > > You are installing with both superlu and superlu_dist. To verify - remove > > superlu - and keep only superlu_dist > > > > I tried this earlier. Here is the error message: > > 0 SNES Function norm 1.511918966798e-02 > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [0]PETSC ERROR: See > https://www.mcs.anl.gov/petsc/documentation/linearsolvertable.html for > possible LU and Cholesky solvers > > *[0]PETSC ERROR: Could not locate solver package superlu for factorization > type LU and matrix type seqaij. Perhaps you must ./configure with > --download-superlu*[0]PETSC ERROR: See > https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > [0]PETSC ERROR: Petsc Development GIT revision: v3.13-163-g4c71feb GIT > Date: 2020-04-18 15:35:50 -0400 > [0]PETSC ERROR: ./ex112d on a arch-summit-opt-gnu-cuda-omp-2db named h23n05 > by adams Sun Apr 19 11:39:05 2020 > [0]PETSC ERROR: Configure options --with-fc=0 --COPTFLAGS="-g -O2 -fPIC > -fopenmp -DFP_DIM=2" --CXXOPTFLAGS="-g -O2 -fPIC -fopenmp" --FOPTFLAGS="-g > -O2 -fPIC -fopenmp" --CUDAOPTFLAGS="-O2 -g" --with-ssl=0 --with-batch=0 > --with-cxx=mpicxx --with-mpiexec="jsrun -g1" --with-cuda=1 > --with-cudac=nvcc --download-p4est=1 --download-zlib --download-hdf5=1 > --download-metis --download-superlu_dist --with-make-np=16 > --download-parmetis --download-triangle > --with-blaslapack-lib="-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 > -lblas -llapack" --with-cc=mpicc --with-shared-libraries=1 --with-x=0 > --with-64-bit-indices=0 --with-debugging=0 > PETSC_ARCH=arch-summit-opt-gnu-cuda-omp-2db --with-openmp=1 > --with-threadsaftey=1 --with-log=1 > [0]PETSC ERROR: #1 MatGetFactor() line 4490 in > /autofs/nccs-svm1_home1/adams/petsc/src/mat/interface/matrix.c > [0]PETSC ERROR: #2 PCSetUp_LU() line 88 in > /autofs/nccs-svm1_home1/adams/petsc/src/ksp/pc/impls/factor/lu/lu.c > [0]PETSC ERROR: #3 PCSetUp() line 894 in > /autofs/nccs-svm1_home1/adams/petsc/src/ksp/pc/interface/precon.c > [0]PETSC ERROR: #4 KSPSetUp() line 376 in > /autofs/nccs-svm1_home1/adams/petsc/src/ksp/ksp/interface/itfunc.c > [0]PETSC ERROR: #5 KSPSolve_Private() line 633 in > /autofs/nccs-svm1_home1/adams/petsc/src/ksp/ksp/interface/itfunc.c > [0]PETSC ERROR: #6 KSPSolve() line 853 in > /autofs/nccs-svm1_home1/adams/petsc/src/ksp/ksp/interface/itfunc.c > [0]PETSC ERROR: #7 SNESSolve_NEWTONLS() line 225 in > /autofs/nccs-svm1_home1/adams/petsc/src/snes/impls/ls/ls.c > [0]PETSC ERROR: #8 SNESSolve() line 4520 in > /autofs/nccs-svm1_home1/adams/petsc/src/snes/interface/snes.c > [0]PETSC ERROR: #9 TSStep_ARKIMEX() line 811 in > /autofs/nccs-svm1_home1/adams/petsc/src/ts/impls/arkimex/arkimex.c > [0]PETSC ERROR: #10 TSStep() line 3721 in > /autofs/nccs-svm1_home1/adams/petsc/src/ts/interface/ts.c > [0]PETSC ERROR: #11 TSSolve() line 4127 in > /autofs/nccs-svm1_home1/adams/petsc/src/ts/interface/ts.c > [0]PETSC ERROR: #12 main() line 955 in ex11.c > > > > > > Satish > > > > > > > > > > > > > > > > > > SuperLU: > > > > Version: 5.2.1 > > > > Includes: > > -I/ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/include > > > > Library: > > -Wl,-rpath,/ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib > > > > -L/ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib -lsuperlu > > > > > > > > which is serial superlu, not superlu_dist. These are 2 different > > codes. > > > > > > > > Sherry > > > > > > > > On Sat, Apr 18, 2020 at 4:54 PM Mark Adams <mfad...@lbl.gov> wrote: > > > > > > > >> > > > >> > > > >> On Sat, Apr 18, 2020 at 3:05 PM Xiaoye S. Li <x...@lbl.gov> wrote: > > > >> > > > >>> Mark, > > > >>> > > > >>> It seems you are talking about serial superlu? There is no GPU > > support > > > >>> in it. Only superlu_dist has GPU. > > > >>> > > > >> > > > >> I am using superlu_dist on one processor. Should that work? > > > >> > > > >> > > > >>> > > > >>> But I don't know why there is a crash. > > > >>> > > > >>> Sherry > > > >>> > > > >>> On Sat, Apr 18, 2020 at 11:44 AM Mark Adams <mfad...@lbl.gov> wrote: > > > >>> > > > >>>> Sherry, I did rebase with master this week: > > > >>>> > > > >>>> SuperLU: > > > >>>> Version: 5.2.1 > > > >>>> Includes: > > -I/ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/include > > > >>>> Library: > > > >>>> -Wl,-rpath,/ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib > > > >>>> -L/ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib -lsuperlu > > > >>>> > > > >>>> I see the same thing with a debug build. > > > >>>> > > > >>>> If anyone is interested in looking at this, I was also able to see > > that > > > >>>> plex/ex10 in my branch, which is a very simple test , also does not > > crash > > > >>>> and also does not seem to use GPUs in SuperLU. > > > >>>> > > > >>>> > > > >>>> On Sat, Apr 18, 2020 at 11:46 AM Xiaoye S. Li <x...@lbl.gov> wrote: > > > >>>> > > > >>>>> When you install "-download-superlu_dist", that is from 'master' > > > >>>>> branch? > > > >>>>> > > > >>>>> In the error trace, I recognized this: > > > >>>>> > > > >>>>> > [h50n09:102287] [ 9] /ccs/home/adams/petsc/arch- > > > >>>>> summit-opt-gnu-cuda-omp/lib/libsuperlu_dist.so.6(dDestroy_ > > > >>>>> LU+0xc4)[0x20000195aff4] > > > >>>>> > > > >>>>> This is to free the L and U data structures at the end of the > > program. > > > >>>>> > > > >>>>> Sherry > > > >>>>> > > > >>>>> On Sat, Apr 18, 2020 at 7:24 AM Mark Adams <mfad...@lbl.gov> > > wrote: > > > >>>>> > > > >>>>>> Back to SuperLU + GPUs (adding Sherry) > > > >>>>>> > > > >>>>>> I get this error (appended) running 'check', as I said before. It > > > >>>>>> looks like ex19 is *failing* with CUDA but it is not clear it has > > > >>>>>> anything to do with SuperLU. I can not find these diagnostics > > that got > > > >>>>>> printed after the error in PETSc or SuperLU. > > > >>>>>> > > > >>>>>> So this is a problem, but moving on to my code (plex/ex11 in > > > >>>>>> mark/feature-xgc-interface-rebase-v2, configure script appended). > > It runs. > > > >>>>>> I use superlu and GPUs, but they do not seem to be used in > > SuperLU: > > > >>>>>> > > > >>>>>> > > > >>>>>> > > ------------------------------------------------------------------------------------------------------------------------ > > > >>>>>> Event Count Time (sec) Flop > > > >>>>>> --- Global --- --- Stage ---- Total GPU - > > CpuToGpu - - > > > >>>>>> GpuToCpu - GPU > > > >>>>>> Max Ratio Max Ratio Max Ratio Mess > > > >>>>>> AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s Mflop/s > > Count Size > > > >>>>>> Count Size %F > > > >>>>>> > > > >>>>>> > > --------------------------------------------------------------------------------------------------------------------------------------------------------------- > > > >>>>>> .... > > > >>>>>> MatLUFactorNum 12 1.0 *2.3416e+01* 1.0 0.00e+00 0.0 0.0e+00 > > > >>>>>> 0.0e+00 0.0e+00 31 0 0 0 0 31 0 0 0 0 0 0 > > *0 > > > >>>>>> 0.00e+00 0 0.00e+00 0* > > > >>>>>> > > > >>>>>> No CUDA version. The times are the same and no GPU > > > >>>>>> communication above. So SuperLU does not seem to be using GPUs. > > > >>>>>> > > > >>>>>> > > > >>>>>> > > ------------------------------------------------------------------------------------------------------------------------ > > > >>>>>> Event Count Time (sec) Flop > > > >>>>>> --- Global --- --- Stage ---- Total > > > >>>>>> Max Ratio Max Ratio Max Ratio Mess > > > >>>>>> AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s > > > >>>>>> > > > >>>>>> > > ------------------------------------------------------------------------------------------------------------------------ > > > >>>>>> .... > > > >>>>>> MatLUFactorNum 12 1.0 *2.3421e+01* 1.0 0.00e+00 0.0 0.0e+00 > > > >>>>>> 0.0e+00 0.0e+00 5 0 0 0 0 5 0 0 0 0 0 > > > >>>>>> > > > >>>>>> There are some differences: ex19 use DMDA and I use DMPlex, > > 'check' > > > >>>>>> is run in my home directory, where files can not be written, and > > I run my > > > >>>>>> code in the project areas. > > > >>>>>> > > > >>>>>> The timings are different without superlu so I think superlu is > > being > > > >>>>>> used. THis is how I run this (w and w/o -mat_superlu_equil > > -dm_mat_type > > > >>>>>> sell) > > > >>>>>> > > > >>>>>> jsrun -n 1 -a 1 -c 2 -g 1 ./ex113d_no_cuda -dim 3 -dm_view > > > >>>>>> hdf5:re33d.h5 -vec_view hdf5:re33d.h5::append -test_type spitzer > > -Ez 0 > > > >>>>>> -petscspace_degree 2 -mass_petscspace_degree 2 > > -petscspace_poly_tensor 1 > > > >>>>>> -mass_petscspace_poly_tensor 1 -dm_type p8est -ion_masses 4 > > -ion_charges 2 > > > >>>>>> -thermal_temps 4,4 -n 1,.5 -n_0 1e20 -ts_monitor -ts_adapt_monitor > > > >>>>>> -snes_rtol 1.e-6 -snes_stol 1.e-9 -snes_monitor > > -snes_converged_reason > > > >>>>>> -snes_max_it 15 -ts_type arkimex -ts_exact_final_time stepover > > > >>>>>> -ts_arkimex_type 1bee -ts_max_snes_failures -1 -ts_rtol 1e-3 > > -ts_dt 1e-1 > > > >>>>>> -ts_adapt_clip .25,1.05 -ts_adapt_dt_max 10 -ts_adapt_dt_min 2e-2 > > > >>>>>> -ts_max_time 3200 -ts_max_steps 1 -ts_adapt_scale_solve_failed > > 0.75 > > > >>>>>> -ts_adapt_time_step_increase_delay 5 -pc_type lu -ksp_type preonly > > > >>>>>> -amr_levels_max 11 -amr_re_levels 0 -amr_z_refine1 0 > > -amr_z_refine2 0 > > > >>>>>> -amr_post_refine 0 -domain_radius -.95 -re_radius 4 -z_radius1 8 > > -z_radius2 > > > >>>>>> .1 -plot_dt .10 -impurity_source_type pulse -pulse_start_time 2600 > > > >>>>>> -pulse_width_time 100 -pulse_rate 1e+0 -t_cold .005 -info > > :dm,tsadapt: > > > >>>>>> -sub_thread_block_size 4 -options_left -log_view > > -pc_factor_mat_solver_type > > > >>>>>> superlu -mat_superlu_equil -dm_mat_type sell > > > >>>>>> > > > >>>>>> So there is a bug in ex19 on SUMMIT and I am not getting GPUs > > turned > > > >>>>>> on in SuperLU. > > > >>>>>> Thoughts? > > > >>>>>> > > > >>>>>> Thanks, > > > >>>>>> Mark > > > >>>>>> > > > >>>>>> 09:28 mark/feature-xgc-interface-rebase-v2 *= ~/petsc$ make > > > >>>>>> PETSC_DIR=/ccs/home/adams/petsc > > PETSC_ARCH=arch-summit-opt-gnu-cuda-omp > > > >>>>>> check > > > >>>>>> Running check examples to verify correct installation > > > >>>>>> Using PETSC_DIR=/ccs/home/adams/petsc and > > > >>>>>> PETSC_ARCH=arch-summit-opt-gnu-cuda-omp > > > >>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI > > > >>>>>> process > > > >>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI > > > >>>>>> processes > > > >>>>>> 2c2,39 > > > >>>>>> < Number of SNES iterations = 2 > > > >>>>>> --- > > > >>>>>> > > > >>>>>> *> ex19: cudahook.cc:762: CUresult host_free_callback(void*): > > > >>>>>> Assertion `cacheNode != __null' failed.*> [h50n09:102287] *** > > > >>>>>> Process received signal *** > > > >>>>>> > CUDA version: v 10010 > > > >>>>>> > CUDA Devices: > > > >>>>>> > > > > >>>>>> > 0 : Tesla V100-SXM2-16GB 7 0 > > > >>>>>> > Global memory: 16128 mb > > > >>>>>> > Shared memory: 48 kb > > > >>>>>> > Constant memory: 64 kb > > > >>>>>> > Block registers: 65536 > > > >>>>>> > > > > >>>>>> > [h50n09:102287] Signal: Aborted (6) > > > >>>>>> > [h50n09:102287] Associated errno: Unknown error 1072693248 > > > >>>>>> (1072693248) > > > >>>>>> > [h50n09:102287] Signal code: User function (kill, sigsend, > > abort, > > > >>>>>> etc.) (0) > > > >>>>>> > [h50n09:102287] [ 0] [0x2000000504d8] > > > >>>>>> > [h50n09:102287] [ 1] > > /lib64/libc.so.6(abort+0x2b4)[0x200021bf2094] > > > >>>>>> > [h50n09:102287] [ 2] /lib64/libc.so.6(+0x356d4)[0x200021be56d4] > > > >>>>>> > [h50n09:102287] [ 3] > > > >>>>>> /lib64/libc.so.6(__assert_fail+0x64)[0x200021be57c4] > > > >>>>>> > [h50n09:102287] [ 4] > > > >>>>>> > > /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/container/../lib/libpami_cudahook.so(_Z18host_free_callbackPv+0x2d8)[0x2000000cd2c8] > > > >>>>>> > [h50n09:102287] [ 5] > > > >>>>>> > > /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/container/../lib/libpami_cudahook.so(cuMemFreeHost+0xb0)[0x2000000c3cc0] > > > >>>>>> > [h50n09:102287] [ 6] > > > >>>>>> > > /sw/summit/cuda/10.1.243/lib64/libcudart.so.10.1(+0x42f50)[0x20000ed02f50] > > > >>>>>> > [h50n09:102287] [ 7] > > > >>>>>> > > /sw/summit/cuda/10.1.243/lib64/libcudart.so.10.1(+0x11db8)[0x20000ecd1db8] > > > >>>>>> > [h50n09:102287] [ 8] > > > >>>>>> > > /sw/summit/cuda/10.1.243/lib64/libcudart.so.10.1(cudaFreeHost+0x74)[0x20000ed12ea4] > > > >>>>>> > [h50n09:102287] [ 9] > > > >>>>>> > > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libsuperlu_dist.so.6(dDestroy_LU+0xc4)[0x20000195aff4] > > > >>>>>> > [h50n09:102287] [10] > > > >>>>>> > > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(+0x7cdb70)[0x2000008bdb70] > > > >>>>>> > [h50n09:102287] [11] > > > >>>>>> > > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(MatLUFactorNumeric+0x1ec)[0x2000005f1a8c] > > > >>>>>> > [h50n09:102287] [12] > > > >>>>>> > > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(+0xbf8270)[0x200000ce8270] > > > >>>>>> > [h50n09:102287] [13] > > > >>>>>> > > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(PCSetUp+0x1a4)[0x200000d8d5a4] > > > >>>>>> > [h50n09:102287] [14] > > > >>>>>> > > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(KSPSetUp+0x40c)[0x200000dc498c] > > > >>>>>> > [h50n09:102287] [15] > > > >>>>>> > > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(+0xcd56fc)[0x200000dc56fc] > > > >>>>>> > [h50n09:102287] [16] > > > >>>>>> > > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(KSPSolve+0x20)[0x200000dc8260] > > > >>>>>> > [h50n09:102287] [17] > > > >>>>>> > > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(+0xe0a170)[0x200000efa170] > > > >>>>>> > [h50n09:102287] [18] > > > >>>>>> > > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(SNESSolve+0x814)[0x200000ebd394] > > > >>>>>> > [h50n09:102287] [19] ./ex19[0x10001a6c] > > > >>>>>> > [h50n09:102287] [20] /lib64/libc.so.6(+0x25200)[0x200021bd5200] > > > >>>>>> > [h50n09:102287] [21] > > > >>>>>> /lib64/libc.so.6(__libc_start_main+0xc4)[0x200021bd53f4] > > > >>>>>> > [h50n09:102287] *** End of error message *** > > > >>>>>> > ERROR: One or more process (first noticed rank 0) terminated > > with > > > >>>>>> signal 6 > > > >>>>>> /ccs/home/adams/petsc/src/snes/tutorials > > > >>>>>> Possible problem with ex19 running with superlu_dist, diffs above > > > >>>>>> > > > >>>>>> > > > >>>>>> > > > >>>>>> > > > >>>>>> #!/usr/bin/env python > > > >>>>>> if __name__ == '__main__': > > > >>>>>> import sys > > > >>>>>> import os > > > >>>>>> sys.path.insert(0, os.path.abspath('config')) > > > >>>>>> import configure > > > >>>>>> configure_options = [ > > > >>>>>> '--with-fc=0', > > > >>>>>> '--COPTFLAGS=-g -O2 -fPIC -fopenmp', > > > >>>>>> '--CXXOPTFLAGS=-g -O2 -fPIC -fopenmp', > > > >>>>>> '--FOPTFLAGS=-g -O2 -fPIC -fopenmp', > > > >>>>>> '--CUDAOPTFLAGS=-O2 -g', > > > >>>>>> '--with-ssl=0', > > > >>>>>> '--with-batch=0', > > > >>>>>> '--with-cxx=mpicxx', > > > >>>>>> '--with-mpiexec=jsrun -g1', > > > >>>>>> '--with-cuda=1', > > > >>>>>> '--with-cudac=nvcc', > > > >>>>>> '--download-p4est=1', > > > >>>>>> '--download-zlib', > > > >>>>>> '--download-hdf5=1', > > > >>>>>> '--download-metis', > > > >>>>>> '--download-superlu', > > > >>>>>> '--download-superlu_dist', > > > >>>>>> '--with-make-np=16', > > > >>>>>> # '--with-hwloc=0', > > > >>>>>> '--download-parmetis', > > > >>>>>> # '--download-hypre', > > > >>>>>> '--download-triangle', > > > >>>>>> # '--download-amgx', > > > >>>>>> # '--download-fblaslapack', > > > >>>>>> '--with-blaslapack-lib=-L' + > > > >>>>>> os.environ['OLCF_NETLIB_LAPACK_ROOT'] + '/lib64 -lblas -llapack', > > > >>>>>> '--with-cc=mpicc', > > > >>>>>> # '--with-fc=mpif90', > > > >>>>>> '--with-shared-libraries=1', > > > >>>>>> # '--known-mpi-shared-libraries=1', > > > >>>>>> '--with-x=0', > > > >>>>>> '--with-64-bit-indices=0', > > > >>>>>> '--with-debugging=0', > > > >>>>>> 'PETSC_ARCH=arch-summit-opt-gnu-cuda-omp', > > > >>>>>> '--with-openmp=1', > > > >>>>>> '--with-threadsaftey=1', > > > >>>>>> '--with-log=1' > > > >>>>>> ] > > > >>>>>> configure.petsc_configure(configure_options) > > > >>>>>> > > > >>>>>> > > > >>>>>> > > > >>>>>> On Wed, Apr 15, 2020 at 9:58 PM Satish Balay <ba...@mcs.anl.gov> > > > >>>>>> wrote: > > > >>>>>> > > > >>>>>>> The crash is inside Superlu_DIST - so don't know what to suggest. > > > >>>>>>> > > > >>>>>>> Might have to debug this via debugger and check with Sherry. > > > >>>>>>> > > > >>>>>>> Satish > > > >>>>>>> > > > >>>>>>> On Wed, 15 Apr 2020, Mark Adams wrote: > > > >>>>>>> > > > >>>>>>> > Ah, OK 'check' will test SuperLU. Semi worked: > > > >>>>>>> > > > > >>>>>>> > s20:13 mark/feature-xgc-interface-rebase *= ~/petsc$ make > > > >>>>>>> > PETSC_DIR=/ccs/home/adams/petsc > > > >>>>>>> PETSC_ARCH=arch-summit-dbg-gnu-cuda-omp > > > >>>>>>> > check > > > >>>>>>> > Running check examples to verify correct installation > > > >>>>>>> > Using PETSC_DIR=/ccs/home/adams/petsc and > > > >>>>>>> > PETSC_ARCH=arch-summit-dbg-gnu-cuda-omp > > > >>>>>>> > C/C++ example src/snes/tutorials/ex19 run successfully with 1 > > MPI > > > >>>>>>> process > > > >>>>>>> > C/C++ example src/snes/tutorials/ex19 run successfully with 2 > > MPI > > > >>>>>>> processes > > > >>>>>>> > 2c2,38 > > > >>>>>>> > < Number of SNES iterations = 2 > > > >>>>>>> > --- > > > >>>>>>> > > CUDA version: v 10010 > > > >>>>>>> > > CUDA Devices: > > > >>>>>>> > > > > > >>>>>>> > > 0 : Tesla V100-SXM2-16GB 7 0 > > > >>>>>>> > > Global memory: 16128 mb > > > >>>>>>> > > Shared memory: 48 kb > > > >>>>>>> > > Constant memory: 64 kb > > > >>>>>>> > > Block registers: 65536 > > > >>>>>>> > > > > > >>>>>>> > > ex19: cudahook.cc:762: CUresult host_free_callback(void*): > > > >>>>>>> Assertion > > > >>>>>>> > `cacheNode != __null' failed. > > > >>>>>>> > > [h16n07:78357] *** Process received signal *** > > > >>>>>>> > > [h16n07:78357] Signal: Aborted (6) > > > >>>>>>> > > [h16n07:78357] Signal code: (1704218624) > > > >>>>>>> > > [h16n07:78357] [ 0] [0x2000000504d8] > > > >>>>>>> > > [h16n07:78357] [ 1] > > /lib64/libc.so.6(abort+0x2b4)[0x200023992094] > > > >>>>>>> > > [h16n07:78357] [ 2] > > /lib64/libc.so.6(+0x356d4)[0x2000239856d4] > > > >>>>>>> > > [h16n07:78357] [ 3] > > > >>>>>>> /lib64/libc.so.6(__assert_fail+0x64)[0x2000239857c4] > > > >>>>>>> > > [h16n07:78357] [ 4] > > > >>>>>>> > > > > >>>>>>> > > /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/container/../lib/libpami_cudahook.so(_Z18host_free_callbackPv+0x2d8)[0x2000000cd2c8] > > > >>>>>>> > > [h16n07:78357] [ 5] > > > >>>>>>> > > > > >>>>>>> > > /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/container/../lib/libpami_cudahook.so(cuMemFreeHost+0xb0)[0x2000000c3cc0] > > > >>>>>>> > > [h16n07:78357] [ 6] > > > >>>>>>> > > > > >>>>>>> > > /sw/summit/cuda/10.1.243/lib64/libcudart.so.10.1(+0x42f50)[0x200010aa2f50] > > > >>>>>>> > > [h16n07:78357] [ 7] > > > >>>>>>> > > > > >>>>>>> > > /sw/summit/cuda/10.1.243/lib64/libcudart.so.10.1(+0x11db8)[0x200010a71db8] > > > >>>>>>> > > [h16n07:78357] [ 8] > > > >>>>>>> > > > > >>>>>>> > > /sw/summit/cuda/10.1.243/lib64/libcudart.so.10.1(cudaFreeHost+0x74)[0x200010ab2ea4] > > > >>>>>>> > > [h16n07:78357] [ 9] > > > >>>>>>> > > > > >>>>>>> > > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libsuperlu_dist.so.6(dDestroy_LU+0x150)[0x200003188058] > > > >>>>>>> > > [h16n07:78357] [10] > > > >>>>>>> > > > > >>>>>>> > > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(+0x12ebc6c)[0x2000013dbc6c] > > > >>>>>>> > > [h16n07:78357] [11] > > > >>>>>>> > > > > >>>>>>> > > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(MatLUFactorNumeric+0x934)[0x200000d2fae4] > > > >>>>>>> > > [h16n07:78357] [12] > > > >>>>>>> > > > > >>>>>>> > > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(+0x1cca7a4)[0x200001dba7a4] > > > >>>>>>> > > [h16n07:78357] [13] > > > >>>>>>> > > > > >>>>>>> > > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(PCSetUp+0xde0)[0x200001f3f990] > > > >>>>>>> > > [h16n07:78357] [14] > > > >>>>>>> > > > > >>>>>>> > > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(KSPSetUp+0x1848)[0x200001fc5594] > > > >>>>>>> > > [h16n07:78357] [15] > > > >>>>>>> > > > > >>>>>>> > > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(+0x1ed9908)[0x200001fc9908] > > > >>>>>>> > > [h16n07:78357] [16] > > > >>>>>>> > > > > >>>>>>> > > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(KSPSolve+0x5d0)[0x200001fcc690] > > > >>>>>>> > > [h16n07:78357] [17] > > > >>>>>>> > > > > >>>>>>> > > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(+0x21e16ac)[0x2000022d16ac] > > > >>>>>>> > > [h16n07:78357] [18] > > > >>>>>>> > > > > >>>>>>> > > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(SNESSolve+0x23f4)[0x2000022255c0] > > > >>>>>>> > > [h16n07:78357] [19] ./ex19[0x10002ac8] > > > >>>>>>> > > [h16n07:78357] [20] > > /lib64/libc.so.6(+0x25200)[0x200023975200] > > > >>>>>>> > > [h16n07:78357] [21] > > > >>>>>>> > /lib64/libc.so.6(__libc_start_main+0xc4)[0x2000239753f4] > > > >>>>>>> > > [h16n07:78357] *** End of error message *** > > > >>>>>>> > > ERROR: One or more process (first noticed rank 0) terminated > > > >>>>>>> with signal > > > >>>>>>> > 6 > > > >>>>>>> > /ccs/home/adams/petsc/src/snes/tutorials > > > >>>>>>> > Possible problem with ex19 running with superlu_dist, diffs > > above > > > >>>>>>> > ========================================= > > > >>>>>>> > > > > >>>>>>> > On Wed, Apr 15, 2020 at 5:58 PM Satish Balay < > > ba...@mcs.anl.gov> > > > >>>>>>> wrote: > > > >>>>>>> > > > > >>>>>>> > > Please send configure.log > > > >>>>>>> > > > > > >>>>>>> > > This is what I get on my linux build: > > > >>>>>>> > > > > > >>>>>>> > > [balay@p1 petsc]$ ./configure > > > >>>>>>> > > --with-mpi-dir=/home/petsc/soft/openmpi-4.0.2-cuda > > --with-cuda=1 > > > >>>>>>> > > --with-openmp=1 --download-superlu-dist=1 && make && make > > check > > > >>>>>>> > > <snip> > > > >>>>>>> > > Running check examples to verify correct installation > > > >>>>>>> > > Using PETSC_DIR=/home/balay/petsc and > > > >>>>>>> PETSC_ARCH=arch-linux-c-debug > > > >>>>>>> > > C/C++ example src/snes/tutorials/ex19 run successfully with 1 > > > >>>>>>> MPI process > > > >>>>>>> > > C/C++ example src/snes/tutorials/ex19 run successfully with 2 > > > >>>>>>> MPI processes > > > >>>>>>> > > 1a2,19 > > > >>>>>>> > > > CUDA version: v 10020 > > > >>>>>>> > > > CUDA Devices: > > > >>>>>>> > > > > > > >>>>>>> > > > 0 : Quadro T2000 7 5 > > > >>>>>>> > > > Global memory: 3911 mb > > > >>>>>>> > > > Shared memory: 48 kb > > > >>>>>>> > > > Constant memory: 64 kb > > > >>>>>>> > > > Block registers: 65536 > > > >>>>>>> > > > > > > >>>>>>> > > > CUDA version: v 10020 > > > >>>>>>> > > > CUDA Devices: > > > >>>>>>> > > > > > > >>>>>>> > > > 0 : Quadro T2000 7 5 > > > >>>>>>> > > > Global memory: 3911 mb > > > >>>>>>> > > > Shared memory: 48 kb > > > >>>>>>> > > > Constant memory: 64 kb > > > >>>>>>> > > > Block registers: 65536 > > > >>>>>>> > > > > > > >>>>>>> > > /home/balay/petsc/src/snes/tutorials > > > >>>>>>> > > Possible problem with ex19 running with superlu_dist, diffs > > above > > > >>>>>>> > > ========================================= > > > >>>>>>> > > Fortran example src/snes/tutorials/ex5f run successfully > > with 1 > > > >>>>>>> MPI process > > > >>>>>>> > > Completed test examples > > > >>>>>>> > > > > > >>>>>>> > > > > > >>>>>>> > > On Wed, 15 Apr 2020, Mark Adams wrote: > > > >>>>>>> > > > > > >>>>>>> > > > On Wed, Apr 15, 2020 at 5:17 PM Satish Balay < > > > >>>>>>> ba...@mcs.anl.gov> wrote: > > > >>>>>>> > > > > > > >>>>>>> > > > > The build should work. It should give some verbose info > > [at > > > >>>>>>> runtime] > > > >>>>>>> > > > > regarding GPUs - from the following code. > > > >>>>>>> > > > > > > > >>>>>>> > > > > > > > >>>>>>> > > > I don't see that and I am running GPUs in my code and have > > > >>>>>>> gotten > > > >>>>>>> > > cusparse > > > >>>>>>> > > > LU to run. Should I use '-info :sys:' ? > > > >>>>>>> > > > > > > >>>>>>> > > > > > > >>>>>>> > > > > >>>>> SRC/cublas_utils.c >>>>>>>>>>> > > > >>>>>>> > > > > void DisplayHeader() > > > >>>>>>> > > > > { > > > >>>>>>> > > > > const int kb = 1024; > > > >>>>>>> > > > > const int mb = kb * kb; > > > >>>>>>> > > > > // cout << "NBody.GPU" << endl << "=========" << > > endl << > > > >>>>>>> endl; > > > >>>>>>> > > > > > > > >>>>>>> > > > > printf("CUDA version: v %d\n",CUDART_VERSION); > > > >>>>>>> > > > > //cout << "Thrust version: v" << > > THRUST_MAJOR_VERSION << > > > >>>>>>> "." << > > > >>>>>>> > > > > THRUST_MINOR_VERSION << endl << endl; > > > >>>>>>> > > > > > > > >>>>>>> > > > > int devCount; > > > >>>>>>> > > > > cudaGetDeviceCount(&devCount); > > > >>>>>>> > > > > printf( "CUDA Devices: \n \n"); > > > >>>>>>> > > > > <snip> > > > >>>>>>> > > > > <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< > > > >>>>>>> > > > > > > > >>>>>>> > > > > Satish > > > >>>>>>> > > > > > > > >>>>>>> > > > > On Wed, 15 Apr 2020, Junchao Zhang wrote: > > > >>>>>>> > > > > > > > >>>>>>> > > > > > I remember Barry said superlu gpu support is broken. > > > >>>>>>> > > > > > --Junchao Zhang > > > >>>>>>> > > > > > > > > >>>>>>> > > > > > > > > >>>>>>> > > > > > On Wed, Apr 15, 2020 at 3:47 PM Mark Adams < > > > >>>>>>> mfad...@lbl.gov> wrote: > > > >>>>>>> > > > > > > > > >>>>>>> > > > > > > How does one use SuperLU with GPUs. I don't seem to > > get > > > >>>>>>> any GPU > > > >>>>>>> > > > > > > performance data so I assume GPUs are not getting > > turned > > > >>>>>>> on. Am I > > > >>>>>>> > > wrong > > > >>>>>>> > > > > > > about that? > > > >>>>>>> > > > > > > > > > >>>>>>> > > > > > > I configure with: > > > >>>>>>> > > > > > > configure options: --with-fc=0 --COPTFLAGS="-g -O2 > > -fPIC > > > >>>>>>> -fopenmp" > > > >>>>>>> > > > > > > --CXXOPTFLAGS="-g -O2 -fPIC -fopenmp" --FOPTFLAGS="-g > > > >>>>>>> -O2 -fPIC > > > >>>>>>> > > > > -fopenmp" > > > >>>>>>> > > > > > > --CUDAOPTFLAGS="-O2 -g" --with-ssl=0 --with-batch=0 > > > >>>>>>> > > --with-cxx=mpicxx > > > >>>>>>> > > > > > > --with-mpiexec="jsrun -g1" --with-cuda=1 > > > >>>>>>> --with-cudac=nvcc > > > >>>>>>> > > > > > > --download-p4est=1 --download-zlib --download-hdf5=1 > > > >>>>>>> > > --download-metis > > > >>>>>>> > > > > > > --download-superlu --download-superlu_dist > > > >>>>>>> --with-make-np=16 > > > >>>>>>> > > > > > > --download-parmetis --download-triangle > > > >>>>>>> > > > > > > > > > >>>>>>> > > > > > > > >>>>>>> > > > > > >>>>>>> > > --with-blaslapack-lib="-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 > > > >>>>>>> > > > > > > -lblas -llapack" --with-cc=mpicc > > > >>>>>>> --with-shared-libraries=1 > > > >>>>>>> > > --with-x=0 > > > >>>>>>> > > > > > > --with-64-bit-indices=0 --with-debugging=0 > > > >>>>>>> > > > > > > PETSC_ARCH=arch-summit-opt-gnu-cuda-omp > > --with-openmp=1 > > > >>>>>>> > > > > > > --with-threadsaftey=1 --with-log=1 > > > >>>>>>> > > > > > > > > > >>>>>>> > > > > > > Thanks, > > > >>>>>>> > > > > > > Mark > > > >>>>>>> > > > > > > > > > >>>>>>> > > > > > > > > >>>>>>> > > > > > > > >>>>>>> > > > > > > > >>>>>>> > > > > > > >>>>>>> > > > > > >>>>>>> > > > > > >>>>>>> > > > > >>>>>>> > > > >>>>>>> > > > > > > > >
