I recently followed the advice from this list and synced the copies of Pan on my desktop and laptop with rsync. (Using Fedora 13 Linux on both computers.) All seemed to go well, but the first time I opened the copy on my desktop after syncing, it marked all of the messages from the last 12 days (while I was away from home) as unread. I had to re-sort them by date and manually mark the older, previously read articles as read again. The command I used was:

rsync -avr j...@khorlia.zeff.us:~/.pan2 ~/.pan2

As far as I could tell, all of the appropriate files were updated, including those in subdirectories. Is there a file someplace else I needed to copy?

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