> I'm having problems when generating 3D molecules using the Python bindings.
> This may be a result of the molecule containing charges, but I'm not certain
> about this.
I haven't seen that problem (interlocking rings) in a long time. Are you sure
your Python bindings are using OB 3.1?
You can also try something like this:
gen3d = openbabel.OBOp.FindType("gen3D")
gen3d.Do(mymol.OBMol, "--best")
-Geoff
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