Hi,
I'm struggling with GDL <http://gnudatalanguage.sourceforge.net/> so that it can be added to oi-userland. Currently it builds successfully but 4 of 178 tests fail. The point is these tests fail due to missing symbols in gdl executable, e.g.: ..... symbol not found: cblas_chemm (/usr/lib/64/libgsl.so.19) ..... Definitely it missing symbols because those symbols are located in the /usr/lib/64/libgslcblas.so library. Funny thing is, that CMake does attempt to link this library: [100%] Linking CXX executable gdl cd /projects/oi-userland/components/scientific/gdl/build/amd64/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gdl.dir/link.txt --verbose=1 /usr/gcc/4.9/bin/g++ -m64 -O3 -DNDEBUG -m64 CMakeFiles/gdl.dir/CFMTLexer.cpp.o CMakeFiles/gdl.dir/FMTIn.cpp.o CMakeFiles/gdl.dir/FMTLexer.cpp.o CMakeFiles/gdl.dir/FMTOut.cpp.o CMakeFiles/gdl.dir/FMTParser.cpp.o CMakeFiles/gdl.dir/GDLInterpreter.cpp.o CMakeFiles/gdl.dir/GDLLexer.cpp.o CMakeFiles/gdl.dir/GDLParser.cpp.o CMakeFiles/gdl.dir/GDLTreeParser.cpp.o CMakeFiles/gdl.dir/allix.cpp.o CMakeFiles/gdl.dir/arrayindex.cpp.o CMakeFiles/gdl.dir/assocdata.cpp.o CMakeFiles/gdl.dir/basegdl.cpp.o CMakeFiles/gdl.dir/basic_fun.cpp.o CMakeFiles/gdl.dir/basic_fun_cl.cpp.o CMakeFiles/gdl.dir/basic_fun_jmg.cpp.o CMakeFiles/gdl.dir/basic_op.cpp.o CMakeFiles/gdl.dir/color.cpp.o CMakeFiles/gdl.dir/convert2.cpp.o CMakeFiles/gdl.dir/convol.cpp.o CMakeFiles/gdl.dir/convol_inc0.cpp.o CMakeFiles/gdl.dir/convol_inc1.cpp.o CMakeFiles/gdl.dir/convol_inc2.cpp.o CMakeFiles/gdl.dir/datatypes.cpp.o CMakeFiles/gdl.dir/datatypesref.cpp.o CMakeFiles/gdl.dir/dcommon.cpp.o CMakeFiles/gdl.dir/dcompiler.cpp.o CMakeFiles/gdl.dir/default_io.cpp.o CMakeFiles/gdl.dir/dialog.cpp.o CMakeFiles/gdl.dir/dinterpreter.cpp.o CMakeFiles/gdl.dir/dnode.cpp.o CMakeFiles/gdl.dir/dpro.cpp.o CMakeFiles/gdl.dir/dstructdesc.cpp.o CMakeFiles/gdl.dir/dstructgdl.cpp.o CMakeFiles/gdl.dir/dvar.cpp.o CMakeFiles/gdl.dir/envt.cpp.o CMakeFiles/gdl.dir/extrat.cpp.o CMakeFiles/gdl.dir/fftw.cpp.o CMakeFiles/gdl.dir/file.cpp.o CMakeFiles/gdl.dir/fmtnode.cpp.o CMakeFiles/gdl.dir/gdleventhandler.cpp.o CMakeFiles/gdl.dir/gdlexception.cpp.o CMakeFiles/gdl.dir/gdlgstream.cpp.o CMakeFiles/gdl.dir/gdlxstream.cpp.o CMakeFiles/gdl.dir/gdljournal.cpp.o CMakeFiles/gdl.dir/gdlpsstream.cpp.o CMakeFiles/gdl.dir/gdlpython.cpp.o CMakeFiles/gdl.dir/gdlsvgstream.cpp.o CMakeFiles/gdl.dir/gdlwidget.cpp.o CMakeFiles/gdl.dir/gdlwidgeteventhandler.cpp.o CMakeFiles/gdl.dir/gdlwxstream.cpp.o CMakeFiles/gdl.dir/gdlzstream.cpp.o CMakeFiles/gdl.dir/getfmtast.cpp.o CMakeFiles/gdl.dir/graphicsdevice.cpp.o CMakeFiles/gdl.dir/basic_pro.cpp.o CMakeFiles/gdl.dir/basic_pro_jmg.cpp.o CMakeFiles/gdl.dir/grib.cpp.o CMakeFiles/gdl.dir/gshhs.cpp.o CMakeFiles/gdl.dir/gsl_fun.cpp.o CMakeFiles/gdl.dir/gsl_matrix.cpp.o CMakeFiles/gdl.dir/hash.cpp.o CMakeFiles/gdl.dir/hdf5_fun.cpp.o CMakeFiles/gdl.dir/hdf_fun.cpp.o CMakeFiles/gdl.dir/hdf_pro.cpp.o CMakeFiles/gdl.dir/ifmt.cpp.o CMakeFiles/gdl.dir/image.cpp.o CMakeFiles/gdl.dir/initct.cpp.o CMakeFiles/gdl.dir/initsysvar.cpp.o CMakeFiles/gdl.dir/io.cpp.o CMakeFiles/gdl.dir/lapack.cpp.o CMakeFiles/gdl.dir/least_squares.cpp.o CMakeFiles/gdl.dir/libinit.cpp.o CMakeFiles/gdl.dir/libinit_ac.cpp.o CMakeFiles/gdl.dir/libinit_cl.cpp.o CMakeFiles/gdl.dir/libinit_gm.cpp.o CMakeFiles/gdl.dir/libinit_jmg.cpp.o CMakeFiles/gdl.dir/libinit_mes.cpp.o CMakeFiles/gdl.dir/libinit_ng.cpp.o CMakeFiles/gdl.dir/libinit_jp.cpp.o CMakeFiles/gdl.dir/list.cpp.o CMakeFiles/gdl.dir/magick_cl.cpp.o CMakeFiles/gdl.dir/math_fun.cpp.o CMakeFiles/gdl.dir/math_fun_ac.cpp.o CMakeFiles/gdl.dir/math_fun_gm.cpp.o CMakeFiles/gdl.dir/math_fun_jmg.cpp.o CMakeFiles/gdl.dir/math_fun_ng.cpp.o CMakeFiles/gdl.dir/math_utl.cpp.o CMakeFiles/gdl.dir/matrix_cholesky.cpp.o CMakeFiles/gdl.dir/matrix_invert.cpp.o CMakeFiles/gdl.dir/mpi.cpp.o CMakeFiles/gdl.dir/ncdf_att_cl.cpp.o CMakeFiles/gdl.dir/ncdf_cl.cpp.o CMakeFiles/gdl.dir/ncdf_dim_cl.cpp.o CMakeFiles/gdl.dir/ncdf_var_cl.cpp.o CMakeFiles/gdl.dir/ncdf4_group.cpp.o CMakeFiles/gdl.dir/new.cpp.o CMakeFiles/gdl.dir/newprognode.cpp.o CMakeFiles/gdl.dir/nullgdl.cpp.o CMakeFiles/gdl.dir/objects.cpp.o CMakeFiles/gdl.dir/ofmt.cpp.o CMakeFiles/gdl.dir/overload.cpp.o CMakeFiles/gdl.dir/plotting_axis.cpp.o CMakeFiles/gdl.dir/plotting_contour.cpp.o CMakeFiles/gdl.dir/plotting_convert_coord.cpp.o CMakeFiles/gdl.dir/plotting_cursor.cpp.o CMakeFiles/gdl.dir/plotting_device.cpp.o CMakeFiles/gdl.dir/plotting_erase.cpp.o CMakeFiles/gdl.dir/plotting_image.cpp.o CMakeFiles/gdl.dir/plotting_map_proj.cpp.o CMakeFiles/gdl.dir/plotting_misc.cpp.o CMakeFiles/gdl.dir/plotting_oplot.cpp.o CMakeFiles/gdl.dir/plotting_plot.cpp.o CMakeFiles/gdl.dir/plotting_plots.cpp.o CMakeFiles/gdl.dir/plotting_polyfill.cpp.o CMakeFiles/gdl.dir/plotting_shade_surf.cpp.o CMakeFiles/gdl.dir/plotting_surface.cpp.o CMakeFiles/gdl.dir/plotting_windows.cpp.o CMakeFiles/gdl.dir/plotting_xyouts.cpp.o CMakeFiles/gdl.dir/plotting.cpp.o CMakeFiles/gdl.dir/print.cpp.o CMakeFiles/gdl.dir/print_tree.cpp.o CMakeFiles/gdl.dir/prognode.cpp.o CMakeFiles/gdl.dir/prognode_lexpr.cpp.o CMakeFiles/gdl.dir/prognodeexpr.cpp.o CMakeFiles/gdl.dir/read.cpp.o CMakeFiles/gdl.dir/semshm.cpp.o CMakeFiles/gdl.dir/sigfpehandler.cpp.o CMakeFiles/gdl.dir/str.cpp.o CMakeFiles/gdl.dir/terminfo.cpp.o CMakeFiles/gdl.dir/topython.cpp.o CMakeFiles/gdl.dir/typetraits.cpp.o CMakeFiles/gdl.dir/widget.cpp.o CMakeFiles/gdl.dir/gdl.cpp.o -o gdl -L/usr/openwin/lib/64 antlr/libantlr.a -ldl /usr/lib/64/libncurses.so /usr/lib/64/libform.so /usr/lib/64/libreadline.so /usr/lib/64/libhistory.so /usr/lib/64/libz.so /usr/lib/64/libpng.so /usr/lib/64/libz.so -fopenmp */usr/lib/64/libgsl.so /usr/lib/64/libgslcblas.so* /usr/lib/64/libplplotd.so /usr/lib/64/libplplotcxxd.so /usr/lib/64/libGraphicsMagick.so /usr/lib/64/libGraphicsMagick++.so -L/usr/lib/amd64 -pthreads -m64 -m64 -L/usr/openwin/lib/64 -lwx_baseu-2.8 -lwx_gtk2u_core-2.8 -lwx_gtk2u_adv-2.8 -lnetcdf /usr/lib/64/libhdf5.so /usr/lib/64/libhdf5_hl.so /usr/lib/64/libhdf5.so /usr/lib/64/libz.so /usr/lib/64/libdl.so /usr/lib/64/libm.so /usr/lib/64/libfftw3.so /usr/lib/64/libfftw3f.so /usr/lib/64/libSM.so /usr/lib/64/libICE.so /usr/lib/64/libX11.so /usr/lib/64/libXext.so -lsocket -lnsl /usr/lib/64/libpng.so /usr/lib/64/libgsl.so /usr/lib/64/libgslcblas.so /usr/lib/64/libplplotd.so /usr/lib/64/libplplotcxxd.so /usr/lib/64/libGraphicsMagick.so /usr/lib/64/libGraphicsMagick++.so -lwx_baseu-2.8 -lwx_gtk2u_core-2.8 -lwx_gtk2u_adv-2.8 -lnetcdf /usr/lib/64/libhdf5_hl.so /usr/lib/64/libdl.so /usr/lib/64/libm.so /usr/lib/64/libfftw3.so /usr/lib/64/libfftw3f.so /usr/lib/64/libSM.so /usr/lib/64/libICE.so /usr/lib/64/libX11.so /usr/lib/64/libXext.so -lsocket -lnsl -Wl,-R/usr/openwin/lib/64:/usr/lib/64: but no *libgslcblas.so* is recorded in the gdl executable: dsend@oi-dev:/projects/oi-userland/components/scientific/gdl$ ldd build/prototype/i386/usr/bin/gdl libdl.so.1 => /usr/lib/64/libdl.so.1 libreadline.so.6 => /usr/lib/64/libreadline.so.6 libz.so.1 => /usr/lib/64/libz.so.1 libpng16.so.16 => /usr/lib/64/libpng16.so.16 * libgsl.so.19 => /usr/lib/64/libgsl.so.19* libplplotd.so.11 => /usr/lib/64/libplplotd.so.11 libplplotcxxd.so.10 => /usr/lib/64/libplplotcxxd.so.10 libGraphicsMagick++.so.12 => /usr/lib/64/libGraphicsMagick++.so.12 libwx_baseu-2.8.so.0 => /usr/lib/64/libwx_baseu-2.8.so.0 libwx_gtk2u_core-2.8.so.0 => /usr/lib/64/libwx_gtk2u_core-2.8.so.0 libwx_gtk2u_adv-2.8.so.0 => /usr/lib/64/libwx_gtk2u_adv-2.8.so.0 libnetcdf.so.11 => /usr/lib/64/libnetcdf.so.11 libhdf5.so.10 => /usr/lib/64/libhdf5.so.10 libm.so.2 => /usr/lib/64/libm.so.2 libfftw3.so.3 => /usr/lib/64/libfftw3.so.3 libfftw3f.so.3 => /usr/lib/64/libfftw3f.so.3 libX11.so.4 => /usr/openwin/lib/64/libX11.so.4 libsocket.so.1 => /usr/lib/64/libsocket.so.1 libnsl.so.1 => /usr/lib/64/libnsl.so.1 libstdc++.so.6 => /usr/lib/64/libstdc++.so.6 librt.so.1 => /usr/lib/64/librt.so.1 libgomp.so.1 => /usr/lib/64/libgomp.so.1 libgcc_s.so.1 => /usr/lib/64/libgcc_s.so.1 libpthread.so.1 => /usr/lib/64/libpthread.so.1 libc.so.1 => /usr/lib/64/libc.so.1 libtermcap.so.1 => /lib/64/libtermcap.so.1 libltdl.so.7 => /usr/lib/64/libltdl.so.7 libcsirocsa.so.0 => /usr/lib/64/libcsirocsa.so.0 libqsastime.so.0 => /usr/lib/64/libqsastime.so.0 libGraphicsMagick.so.3 => /usr/lib/amd64/libGraphicsMagick.so.3 libgtk-x11-2.0.so.0 => /usr/lib/64/libgtk-x11-2.0.so.0 libgdk-x11-2.0.so.0 => /usr/lib/64/libgdk-x11-2.0.so.0 libXinerama.so.1 => /usr/lib/64/libXinerama.so.1 libgdk_pixbuf-2.0.so.0 => /usr/lib/64/libgdk_pixbuf-2.0.so.0 libpango-1.0.so.0 => /usr/lib/64/libpango-1.0.so.0 libgobject-2.0.so.0 => /usr/lib/64/libgobject-2.0.so.0 libglib-2.0.so.0 => /usr/lib/64/libglib-2.0.so.0 libXxf86vm.so.1 => /usr/lib/64/libXxf86vm.so.1 libSM.so.6 => /usr/lib/64/libSM.so.6 libjpeg.so.62 => /usr/lib/64/libjpeg.so.62 libtiff.so.5 => /usr/lib/64/libtiff.so.5 libSDL-1.2.so.0 => /usr/lib/64/libSDL-1.2.so.0 libhdf5_hl.so.10 => /usr/lib/64/libhdf5_hl.so.10 libcurl.so.4 => /usr/lib/64/libcurl.so.4 libxcb.so.1 => /usr/lib/64/libxcb.so.1 libXext.so.0 => /usr/lib/64/libXext.so.0 libmp.so.2 => /lib/64/libmp.so.2 libmd.so.1 => /lib/64/libmd.so.1 libwebp.so.5 => /usr/lib/64/libwebp.so.5 liblcms2.so.2 => /usr/lib/64/liblcms2.so.2 libfreetype.so.6 => /usr/lib/64/libfreetype.so.6 libjasper.so.1 => /usr/lib/64/libjasper.so.1 libjpeg.so.8 => /usr/lib/libjpeg8-turbo/lib/amd64/libjpeg.so.8 libbz2.so.1 => /usr/lib/64/libbz2.so.1 libxml2.so.2 => /usr/lib/64/libxml2.so.2 libgmodule-2.0.so.0 => /usr/lib/amd64/libgmodule-2.0.so.0 libpangocairo-1.0.so.0 => /usr/lib/amd64/libpangocairo-1.0.so.0 libXfixes.so.1 => /usr/lib/amd64/libXfixes.so.1 libatk-1.0.so.0 => /usr/lib/amd64/libatk-1.0.so.0 libcairo.so.2 => /usr/lib/amd64/libcairo.so.2 libgio-2.0.so.0 => /usr/lib/amd64/libgio-2.0.so.0 libpangoft2-1.0.so.0 => /usr/lib/amd64/libpangoft2-1.0.so.0 libfontconfig.so.1 => /usr/lib/amd64/libfontconfig.so.1 libXrender.so.1 => /usr/lib/64/libXrender.so.1 libXrandr.so.2 => /usr/lib/64/libXrandr.so.2 libXcursor.so.1 => /usr/lib/64/libXcursor.so.1 libXcomposite.so.1 => /usr/lib/64/libXcomposite.so.1 libXdamage.so.1 => /usr/lib/64/libXdamage.so.1 libffi.so.6 => /usr/lib/amd64/libffi.so.6 libICE.so.6 => /usr/lib/64/libICE.so.6 liblzma.so.5 => /usr/lib/64/liblzma.so.5 libnghttp2.so.14 => /usr/lib/64/libnghttp2.so.14 libssh2.so.1 => /usr/lib/64/libssh2.so.1 libssl.so.1.0.0 => /lib/64/libssl.so.1.0.0 libcrypto.so.1.0.0 => /lib/64/libcrypto.so.1.0.0 libgss.so.1 => /usr/lib/64/libgss.so.1 liblber-2.4.so.2 => /usr/lib/64/liblber-2.4.so.2 libldap_r-2.4.so.2 => /usr/lib/64/libldap_r-2.4.so.2 libXau.so.6 => /usr/lib/amd64/libXau.so.6 libXdmcp.so.6 => /usr/lib/amd64/libXdmcp.so.6 libharfbuzz.so.0 => /usr/lib/64/libharfbuzz.so.0 libpixman-1.so.0 => /usr/lib/64/libpixman-1.so.0 libEGL.so.1 => /usr/lib/64/libEGL.so.1 libX11-xcb.so.1 => /usr/lib/64/libX11-xcb.so.1 libxcb-render.so.0 => /usr/lib/64/libxcb-render.so.0 libGL.so.1 => /usr/lib/64/libGL.so.1 libresolv.so.2 => /usr/lib/amd64/libresolv.so.2 libexpat.so.1 => /usr/lib/64/libexpat.so.1 libsasl.so.1 => /usr/lib/amd64/libsasl.so.1 libgraphite2.so.3 => /usr/lib/64/libgraphite2.so.3 libxcb-dri2.so.0 => /usr/lib/64/libxcb-dri2.so.0 libxcb-xfixes.so.0 => /usr/lib/64/libxcb-xfixes.so.0 libxcb-dri3.so.0 => /usr/lib/64/libxcb-dri3.so.0 libxcb-present.so.0 => /usr/lib/64/libxcb-present.so.0 libxcb-sync.so.1 => /usr/lib/64/libxcb-sync.so.1 libxshmfence.so.1 => /usr/lib/64/libxshmfence.so.1 libdrm.so.2 => /usr/lib/xorg/amd64/libdrm.so.2 libglapi.so.0 => /usr/lib/amd64/libglapi.so.0 libxcb-glx.so.0 => /usr/lib/amd64/libxcb-glx.so.0 libdevinfo.so.1 => /lib/64/libdevinfo.so.1 libnvpair.so.1 => /lib/64/libnvpair.so.1 libsec.so.1 => /lib/64/libsec.so.1 libgen.so.1 => /lib/64/libgen.so.1 libavl.so.1 => /lib/64/libavl.so.1 libidmap.so.1 => /usr/lib/64/libidmap.so.1 libuutil.so.1 => /lib/64/libuutil.so.1 libcurses.so.1 => /lib/64/libcurses.so.1 libXevie.so.1 => /usr/lib/64/libXevie.so.1 libXss.so.1 => /usr/lib/64/libXss.so.1 But that's not the end. When I copy the very same linking command executed by CMake and execute it manually I get what I expect: dsend@oi-dev:/projects/oi-userland/components/scientific/gdl/build/amd64/src$ ldd gdl libdl.so.1 => /usr/lib/64/libdl.so.1 libncurses.so.5 => /usr/lib/64/libncurses.so.5 libform.so.1 => /usr/lib/64/libform.so.1 libreadline.so.6 => /usr/lib/64/libreadline.so.6 libhistory.so.6 => /usr/lib/64/libhistory.so.6 libz.so.1 => /usr/lib/64/libz.so.1 libpng16.so.16 => /usr/lib/64/libpng16.so.16 *libgsl.so.19 => /usr/lib/64/libgsl.so.19* * libgslcblas.so.0 => /usr/lib/64/libgslcblas.so.0* libplplotd.so.11 => /usr/lib/64/libplplotd.so.11 libplplotcxxd.so.10 => /usr/lib/64/libplplotcxxd.so.10 and boom! *libgslcblas.so *appears as expected and tests pass. I ran out of ideas why this happens. Maybe I spent too much time on this problem and cannot see anything right now. Maybe I'm missing something obvious so another pair of eyes would be great :) Any ideas? You can find the component package files here: https://github.com/dsendkowski/oi-userland/tree/gdl regards, Darek
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