Hi Robert, That did the trick, thanks!
Alex On Thu, Mar 27, 2014 at 3:02 PM, Robert Kern <[email protected]> wrote: > On Thu, Mar 27, 2014 at 8:50 PM, David Cournapeau <[email protected]> > wrote: > > > > On Thu, Mar 27, 2014 at 8:30 PM, Alex Goodman < > [email protected]> > > wrote: > >> > >> Hi all, > >> > >> I have used f2py in the past on a Linux machine with virtually no > issues. > >> However on my Mac, I get the following error when importing an f2py > >> generated extension: > >> > >> Fatal Python error: PyThreadState_Get: no current thread > >> Abort trap: 6 > >> > >> After doing some research I found out that the extension is linked to > the > >> wrong python installation: > >> otool -L add.so > >> add.so: > >> ./add.so (compatibility version 0.0.0, current version 0.0.0) > >> /System/Library/Frameworks/Python.framework/Versions/2.7/Python > >> (compatibility version 2.7.0, current version 2.7.2) > >> /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version > >> 169.3.0) > >> > >> This seems odd because I am using the f2py executable included in > Anaconda > >> 1.9.1. I can easily fix this problem by manually using install_name_tool > >> -change on the extension to link the correct library location, but this > is > >> really cumbersome. Is there an alternative solution, such as an > additional > >> command-line argument when invoking f2py? > > > > > > This sounds like an issue specific to Anaconda, and you may get better > > support on the Anaconda support ML. > > I think it's our bug. numpy.distutils adds an explicit `-framework > Python` in the Intel Fortran link line. We should be just be using > `-undefined dynamic_lookup`. > > > https://github.com/numpy/numpy/blob/master/numpy/distutils/fcompiler/intel.py#L71 > > Alex, can you edit that file to remove the '-Wl,-framework,Python' > from that list and try building again? > > -- > Robert Kern > _______________________________________________ > NumPy-Discussion mailing list > [email protected] > http://mail.scipy.org/mailman/listinfo/numpy-discussion > -- Alex Goodman Graduate Research Assistant Department of Atmospheric Science Colorado State University
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