Hi, On Sun, Mar 4, 2012 at 8:32 PM, Mark Wiebe <mwwi...@gmail.com> wrote: > On Sun, Mar 4, 2012 at 10:08 PM, Matthew Brett <matthew.br...@gmail.com> > wrote: >> >> Hi, >> >> On Sun, Mar 4, 2012 at 11:41 AM, Mark Wiebe <mwwi...@gmail.com> wrote: >> > On Sun, Mar 4, 2012 at 11:27 AM, Matthew Brett <matthew.br...@gmail.com> >> > wrote: >> >> >> >> Hi, >> >> >> >> On Sat, Mar 3, 2012 at 12:07 AM, Matthew Brett >> >> <matthew.br...@gmail.com> >> >> wrote: >> >> > Hi, >> >> > >> >> > On Fri, Mar 2, 2012 at 9:05 PM, Charles R Harris >> >> > <charlesr.har...@gmail.com> wrote: >> >> >> >> >> >> >> >> >> On Fri, Mar 2, 2012 at 4:36 PM, Matthew Brett >> >> >> <matthew.br...@gmail.com> >> >> >> wrote: >> >> >>> >> >> >>> Hi, >> >> >>> >> >> >>> Sorry that this report is not complete, I don't have full access to >> >> >>> this box but, on a Debian squeeze machine running linux >> >> >>> 2.6.32-5-sparc64-smp: >> >> >>> >> >> >>> nosetests >> >> >>> >> >> >>> >> >> >>> ~/usr/local/lib/python2.6/site-packages/numpy/lib/tests/test_io.py:TestFromTxt.test_user_missing_values >> >> >>> >> >> >>> test_user_missing_values (test_io.TestFromTxt) ... Bus error >> >> >>> >> >> >>> This on current master : 1.7.0.dev-b9872b4 >> >> >>> >> >> >> >> >> >> Hmm, some tests might have been recently enabled. Any chance of >> >> >> doing a >> >> >> bisection? >> >> >> >> Struggling because compilation is very slow and there are lots of >> >> untestable commits. df907e6 is the first known bad. Here's the >> >> output from a log: >> >> >> >> * df907e6 - (HEAD, refs/bisect/bad) BLD: Failure in single file build >> >> mode because of a static function in two separate files (6 months ago) >> >> [Mark Wiebe] >> >> * 01b200b - (refs/bisect/skip-01b200b10149312f51234448e44b230b1b548046) >> >> BUG: nditer: The nditer was reusing the reduce loop inappropriately >> >> (#1938) (6 months ago) [Mark Wiebe] >> >> * f45fd67 - (refs/bisect/skip-f45fd67fe8eefc8fd2e4b914ab4e376ab5226887) >> >> DOC: Small tweak to release notes (6 months ago) [Mark Wiebe] >> >> * 73be11d - (refs/bisect/skip-73be11db794d115a7d9bd2e822c0d8008bc14a28) >> >> BUG: Some bugs in squeeze and concatenate found by testing SciPy (6 >> >> months ago) [Mark Wiebe] >> >> * c873295 - (refs/bisect/skip-c8732958c8e07f2306029dfde2178faf9c01d049) >> >> TST: missingdata: Finish up NA mask tests for np.std and np.var (6 >> >> months ago) [Mark Wiebe] >> >> * e15712c - (refs/bisect/skip-e15712cf5df41806980f040606744040a433b331) >> >> BUG: nditer: NA masks in arrays with leading 1 dimensions had an issue >> >> (6 months ago) [Mark Wiebe] >> >> * ded81ae - (refs/bisect/skip-ded81ae7d529ac0fba641b7e5e3ecf52e120700f) >> >> ENH: missingdata: Implement tests for np.std, add skipna= and >> >> keepdims= parameters to more functions (6 months ago) [Mark Wiebe] >> >> * a112fc4 - (refs/bisect/skip-a112fc4a6b28fbb85e1b0c6d423095d13cf7b226) >> >> ENH: missingdata: Implement skipna= support for np.std and np.var (6 >> >> months ago) [Mark Wiebe] >> >> * 0fa4f22 - (refs/bisect/skip-0fa4f22fec4b19e2a8c1d93e5a1f955167c9addd) >> >> ENH: missingdata: Support 'skipna=' parameter in np.mean (6 months >> >> ago) [Mark Wiebe] >> >> * bfda229 - (refs/bisect/skip-bfda229ec93d37b1ee2cdd8b9443ec4e34536bbf) >> >> ENH: missingdata: Create count_reduce_items function (6 months ago) >> >> [Mark Wiebe] >> >> * d9b3f90 - (refs/bisect/skip-d9b3f90de3213ece9a78b77088fdec17910e81d9) >> >> ENH: missingdata: Move the Reduce boilerplate into a function >> >> PyArray_ReduceWrapper (6 months ago) [Mark Wiebe] >> >> * 67ece6b - (refs/bisect/skip-67ece6bdd2b35d011893e78154dbff6ab51c7d35) >> >> ENH: missingdata: Finish count_nonzero as a full-fledged reduction >> >> operation (6 months ago) [Mark Wiebe] >> >> * 6bfd819 - (refs/bisect/skip-6bfd819a0897caf6e6db244930c40ed0d17b9e62) >> >> ENH: missingdata: Towards making count_nonzero a full-featured >> >> reduction operation (6 months ago) [Mark Wiebe] >> >> * a1faa1b - (refs/bisect/skip-a1faa1b6883c47333508a0476c1304b0a8a3f64e) >> >> ENH: missingdata: Move some of the refactored reduction code into the >> >> API (6 months ago) [Mark Wiebe] >> >> * f597374 - (refs/bisect/skip-f597374edc298810083799e8539c99fc0a93b319) >> >> ENH: missingdata: Change default to create NA-mask when NAs are in >> >> lists (6 months ago) [Mark Wiebe] >> >> * 965e4cf - (refs/bisect/skip-965e4cff5c4c50e8ff051a3363adc6cf6aa640cd) >> >> ENH: missingdata: trying some more functions to see how they treat NAs >> >> (6 months ago) [Mark Wiebe] >> >> * b1cb211 - (refs/bisect/skip-b1cb211d159c617ee4ebd16266d6f1042417ef75) >> >> ENH: missingdata: Add nastr= parameter to np.set_printoptions() (6 >> >> months ago) [Mark Wiebe] >> >> * ba4d116 - (refs/bisect/skip-ba4d1161fe4943cb720f35c0abfd0581628255d6) >> >> BUG: missingdata: Fix mask usage in PyArray_TakeFrom, add tests for it >> >> (6 months ago) [Mark Wiebe] >> >> * a3a0ee8 - (refs/bisect/skip-a3a0ee8c72fdd55ffacb96bbb1fa9c3569cfb3e9) >> >> BUG: missingdata: The ndmin parameter to np.array wasn't respecting NA >> >> masks (6 months ago) [Mark Wiebe] >> >> * 9194b3a - (refs/bisect/skip-9194b3af704df71aa9b1ff2f53f169848d0f9dc7) >> >> ENH: missingdata: Rewrite PyArray_Concatenate to work with NA masks (6 >> >> months ago) [Mark Wiebe] >> >> * 99a21ef - (refs/bisect/good-99a21efff4b1f2292dc370c7c9c7c58f10385f2a) >> >> ENH: missingdata: Add NA support to np.diagonal, change np.diagonal to >> >> always return a view (6 months ago) [Mark Wiebe] >> >> >> >> So - the problem arises somewhere between 99a21ef (good) and df907e6 >> >> (bad) >> >> >> >> There seems to be a compilation error for the skipped commits - here's >> >> the one I tested, 9194b3a: >> > >> > >> > If you enable separate compilation by setting an environment variable, >> > these >> > commits should build as well. >> > >> > $ export ENABLE_SEPARATE_COMPILATION=1 >> > <proceed with builds> >> >> I might be doing something wrong but: > > > I made a mistake, sorry! I even copy/pasted the variable name to make sure I > didn't misspell it, but I didn't notice that setup.py uses a different but > nearly identical name internally as the environment variable. That should > have been > > $ export NPY_SEPARATE_COMPILATION=1
Thanks, that did it: 9194b3af704df71aa9b1ff2f53f169848d0f9dc7 is the first bad commit Let me know if I can debug further, See you, Matthew _______________________________________________ NumPy-Discussion mailing list NumPy-Discussion@scipy.org http://mail.scipy.org/mailman/listinfo/numpy-discussion
