On 10 August 2011 04:01, Pauli Virtanen <p...@iki.fi> wrote:
> Mon, 08 Aug 2011 11:27:14 -0400, Angus McMorland wrote:
>> I've just upgraded to the latest numpy from git along with upgrading
>> Ubuntu to natty. Now some of my code, which relies on ctypes-wrapping of
>> data structures from a messaging system, fails with the error message:
>>
>> "RuntimeWarning: Item size computed from the PEP 3118 buffer format
>> string does not match the actual item size."
>>
>> Can anyone tell me if this was a change that has been added into the git
>> version recently, in which case I can checkout a previous version of
>> numpy, or if I've got to try downgrading the whole system (ergh.)
>
> Python's ctypes module implements its PEP 3118 support incorrectly
> in recent Python versions. There's a patch in waiting:
>
> http://bugs.python.org/issue10744
>
> In the meantime, you can just silence the warnings using the warnings
> module,
>
> warnings.simplefilter("ignore", RuntimeWarning)
Thanks Pauli.
I was seeing a segfault everytime I saw the error message, and since
both started happening at the same time, I was guilty of mixing
correlation and causation. After rebuilding numpy about 10 times, I
have identified the first git commit after which the segfault appears
(feb8079070b8a659d7ee) , and a small piece of code that triggers it:
from ctypes import Structure, c_double
#-- copied out of an xml2py generated file
class S(Structure):
pass
S._pack_ = 4
S._fields_ = [
('field', c_double * 2),
]
#--
import numpy as np
print np.version.version
s = S()
print "S", np.asarray(s.field)
Can anyone confirm this, in which case it's probably a bug?
Thanks,
Angus
--
AJC McMorland
Post-doctoral research fellow
Neurobiology, University of Pittsburgh
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