Hi, we have RHEL 5.2 x86_64, python 2.6, intel compilers 11.0.69, intel mkl 10.1. We are trying to configure numpy 1.6.0 and we are getting below errors. our site.cfg is : ------------------------- [mkl] #mkl_libs = mkl_blacs_intelmpi_ilp64, mkl_blacs_intelmpi_lp64, mkl_core, mkl_def, mkl_gf_ilp64, mkl_gf_lp64, mkl_gnu_thread, mkl_intel_ilp64, mkl_intel_lp64, mkl_intel_sp2dp, mkl_intel_thread, mkl_lapack, mkl_mc3, mkl_mc, mkl_p4n, mkl_scalapack_ilp64, mkl_scalapack_lp64, mkl_sequential, mkl, iomp, guide, mkl_vml_def, mkl_vml_mc2, mkl_vml_mc3, mkl_vml_mc, mkl_vml_p4n,mkl_def, mkl_intel_lp64, mkl_intel_thread, mkl_core, mkl_mc
mkl_libs = mkl_def, mkl_intel_lp64, mkl_intel_thread, mkl_core, mkl_mc lapack_libs = mkl_lapack95_lp64 #lapack_libs =mkl_lapack,mkl_scalapack_ilp64,mkl_scalapack_lp64,mkl_lapack95_lp64 library_dirs = /opt/intel/Compiler/11.0/069/mkl/lib/em64t:/opt/intel/Compiler/11.0/069/lib/intel64/ include_dirs = /opt/intel/Compiler/11.0/069/mkl/include:/opt/intel/Compiler/11.0/069/include/ ------------------------- We are not able to understand what all flags to include with icc and ifort in intelccompiler.py and intel.py. Also what ll libraries to link for above configuration is not given. Can somebody guide for with proper guidelines so that installation goes smooth. ERRORS : DeprecationWarning) C compiler: cc compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/home/external/unipune/gadre/Python-2.6/Include -I/home/external/unipune/gadre/Python-2.6 -c ' cc: _configtest.c cc _configtest.o -o _configtest _configtest failure. removing: _configtest.c _configtest.o _configtest building data_files sources build_src: building npy-pkg config files customize IntelCCompiler customize IntelCCompiler using build_clib building 'npymath' library compiling C sources C compiler: cc creating build/temp.linux-x86_64-2.6 creating build/temp.linux-x86_64-2.6/build creating build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6 creating build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/numpy creating build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/numpy/core creating build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/numpy/core/src creating build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/numpy/core/src/npymath creating build/temp.linux-x86_64-2.6/numpy creating build/temp.linux-x86_64-2.6/numpy/core creating build/temp.linux-x86_64-2.6/numpy/core/src creating build/temp.linux-x86_64-2.6/numpy/core/src/npymath compile options: '-Inumpy/core/include -Ibuild/src.linux-x86_64-2.6/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/home/external/un ipune/gadre/Python-2.6/Include -I/home/external/unipune/gadre/Python-2.6 -Ibuild/src.linux-x86_64-2.6/numpy/core/src/multiarray -Ibuild/src.linux-x86_64-2.6/numpy/core/src/umath -c' cc: numpy/core/src/npymath/halffloat.c cc: build/src.linux-x86_64-2.6/numpy/core/src/npymath/npy_math_complex.c cc: build/src.linux-x86_64-2.6/numpy/core/src/npymath/npy_math.c cc: build/src.linux-x86_64-2.6/numpy/core/src/npymath/ieee754.c ar: adding 4 object files to build/temp.linux-x86_64-2.6/libnpymath.a running build_ext customize IntelCCompiler customize IntelCCompiler using build_ext building 'numpy.core._sort' extension compiling C sources C compiler: cc compile options: '-Inumpy/core/include -Ibuild/src.linux-x86_64-2.6/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/home/external/un ipune/gadre/Python-2.6/Include -I/home/external/unipune/gadre/Python-2.6 -Ibuild/src.linux-x86_64-2.6/numpy/core/src/multiarray -Ibuild/src.linux-x86_64-2.6/numpy/core/src/umath -c' cc: build/src.linux-x86_64-2.6/numpy/core/src/_sortmodule.c creating build/lib.linux-x86_64-2.6 creating build/lib.linux-x86_64-2.6/numpy creating build/lib.linux-x86_64-2.6/numpy/core cc -shared build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/numpy/core/src/_sortmodule.o -Lbuild/temp.linux-x86_64-2.6 -lnpymath -lm -o build/lib.linux-x86_64-2.6/numpy/core/_sort.so /usr/bin/ld: build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/numpy/core/src/_sortmodule.o: relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/numpy/core/src/_sortmodule.o: could not read symbols: Bad value collect2: ld returned 1 exit status /usr/bin/ld: build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/numpy/core/src/_sortmodule.o: relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/numpy/core/src/_sortmodule.o: could not read symbols: Bad value collect2: ld returned 1 exit status error: Command "cc -shared build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/numpy/core/src/_sortmodule.o -Lbuild/temp.linux-x86_64-2.6 -lnpymath -lm -o build/lib.linux-x86_64-2.6/numpy/core/_sort.so" failed with exit status 1
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