Thank you Paolo and Miguel! It works correctly
Regards, Pablo El mié, 2 abr 2025 a las 13:29, Paolo Piras (<[email protected]>) escribió: > Set > header=F in read.csv() > > Il mer 2 apr 2025, 18:25 Pablo Fisichella <[email protected]> ha > scritto: > >> Dear all, >> >> I digitized 3D landmarks (n=299) using the software Checkpoint and >> exported the files as .csv. I'm trying to upload multiple files in .csv >> format using the function "read.csv.folder" from the Morpho package, or a >> single file using the function "readLandmarks.csv" from the same package. >> However, the issue is that the x, y, and z coordinates from the first >> landmark are not uploaded, while only the other 298 points are included, >> and NAs are introduced in the last row. >> >> The code I'm using is: >> >> landmark.array <- read.csv.folder("path", 1:299, y = 4:6, rownames = >> NULL, header = TRUE, >> dec = ".", sep = ",", pattern = "csv", >> addSpec = NULL, back = TRUE) >> This is the result: >> >> , , Ind1 >> >> X Y Z >> 1 -2.18000000 0.237566000 5.2655400 >> 2 -8.69000000 -6.650000000 1.2601890 >> 3 3.77826400 -8.630000000 4.2642350 >> 4 -7.99000000 -1.180000000 1.6310280 >> 5 4.34564100 -2.930000000 4.6177230 >> 6 -8.97000000 -7.350000000 0.6072258 >> 7 -8.98000000 -8.300000000 1.2513500 >> 8 3.99086800 -9.970000000 3.8588860 >> 9 4.24589300 -9.110000000 3.3048690 >> 10 3.95688200 -9.990000000 3.8555440 >> 11 3.84379100 -10.000000000 4.3102960 >> 12 3.26217500 -10.100000000 4.5509180 >> 13 2.37966200 -10.100000000 4.7165460 >> 14 1.34776000 -10.100000000 4.8121060 >> 15 0.23383380 -9.990000000 4.8329710 >> 16 -0.93400000 -10.000000000 4.7235750 >> 17 -2.14000000 -10.300000000 4.5075430 >> 18 -3.31000000 -10.300000000 4.2902630 >> 19 -4.40000000 -10.000000000 4.0897090 >> 20 -5.40000000 -9.460000000 3.8938110 >> 21 -6.30000000 -9.120000000 3.6209790 >> 22 -7.08000000 -8.910000000 3.2707120 >> 23 -7.74000000 -8.740000000 2.8410040 >> 24 -8.32000000 -8.630000000 2.3211320 >> 25 -8.80000000 -8.530000000 1.7538540 >> 26 -8.96000000 -8.310000000 1.2594320 >> 27 4.25949900 -9.700000000 3.9731930 >> 28 3.70783000 -10.100000000 4.4555560 >> 29 2.75185600 -10.200000000 4.7467360 >> 30 1.69306400 -10.100000000 4.9488820 >> 31 0.66578200 -10.100000000 5.0655640 >> 32 -0.37400000 -9.900000000 5.0958600 >> 33 -1.40000000 -10.100000000 5.0577690 >> 34 -2.46000000 -10.300000000 4.9589680 >> 35 -3.52000000 -10.200000000 4.8004170 >> 36 -4.50000000 -9.990000000 4.5865970 >> 37 -5.37000000 -9.560000000 4.3144640 >> 38 -6.15000000 -9.240000000 3.9876750 >> 39 -6.88000000 -9.010000000 3.5826820 >> 40 -7.57000000 -8.800000000 3.0799070 >> 41 -8.27000000 -8.630000000 2.4552900 >> 42 -8.96000000 -8.420000000 1.7132720 >> 43 -9.28000000 -7.630000000 0.9160942 >> 44 4.28558000 -9.380000000 4.0822780 >> 45 3.80255400 -9.530000000 4.8178280 >> 46 2.87347100 -9.910000000 5.2712720 >> 47 1.66577000 -10.100000000 5.5316360 >> 48 0.49480790 -10.100000000 5.6795720 >> 49 -0.62500000 -9.940000000 5.6958760 >> 50 -1.67000000 -9.830000000 5.6549180 >> 51 -2.70000000 -9.770000000 5.5685380 >> 52 -3.67000000 -9.630000000 5.4051990 >> 53 -4.60000000 -9.470000000 5.1907800 >> 54 -5.47000000 -9.260000000 4.9037640 >> 55 -6.28000000 -9.070000000 4.5386360 >> 56 -7.07000000 -8.870000000 4.0745110 >> 57 -7.86000000 -8.620000000 3.4827130 >> 58 -8.63000000 -8.250000000 2.7449090 >> 59 -9.20000000 -7.720000000 1.9071930 >> 60 -9.10000000 -7.040000000 0.9867042 >> 61 4.10885900 -9.000000000 4.1947880 >> 62 3.01131600 -8.840000000 4.8753070 >> 63 1.93227000 -8.780000000 5.2088910 >> 64 1.02626600 -8.810000000 5.5867010 >> 65 0.02446002 -8.730000000 5.7317640 >> 66 -0.94700000 -8.530000000 5.7142420 >> 67 -1.88000000 -8.560000000 5.7892050 >> 68 -2.80000000 -8.530000000 5.7559490 >> 69 -3.70000000 -8.460000000 5.6377850 >> 70 -4.52000000 -8.240000000 5.3832730 >> 71 -5.31000000 -8.100000000 5.1187110 >> 72 -6.07000000 -7.980000000 4.7943710 >> 73 -6.80000000 -7.840000000 4.3558030 >> 74 -7.50000000 -7.650000000 3.7806240 >> 75 -8.05000000 -7.370000000 3.0464650 >> 76 -8.61000000 -7.130000000 2.2179280 >> 77 -8.89000000 -6.830000000 1.1045020 >> 78 3.75444700 -8.620000000 4.3028460 >> 79 2.51529100 -8.420000000 4.8644000 >> 80 1.56739500 -8.270000000 5.2821570 >> 81 0.68271470 -8.180000000 5.6998430 >> 82 -0.27000000 -8.030000000 5.8278500 >> 83 -1.17000000 -7.940000000 5.9681840 >> 84 -2.05000000 -7.900000000 6.0620920 >> 85 -2.91000000 -7.820000000 6.0226410 >> 86 -3.74000000 -7.680000000 5.8630720 >> 87 -4.50000000 -7.520000000 5.6175140 >> 88 -5.23000000 -7.380000000 5.3332920 >> 89 -5.91000000 -7.240000000 4.9526780 >> 90 -6.60000000 -7.160000000 4.5310050 >> 91 -7.23000000 -7.030000000 3.9443510 >> 92 -7.78000000 -6.890000000 3.2141910 >> 93 -8.31000000 -6.770000000 2.3801570 >> 94 -8.69000000 -6.650000000 1.2574760 >> 95 3.30150000 -8.280000000 4.3341590 >> 96 2.19530300 -7.990000000 4.8782050 >> 97 1.35706400 -7.790000000 5.5020470 >> 98 0.45563390 -7.650000000 5.9144540 >> 99 -0.45600000 -7.500000000 6.1137970 >> 100 -1.33000000 -7.370000000 6.2494060 >> 101 -2.17000000 -7.250000000 6.2873130 >> 102 -2.99000000 -7.140000000 6.2416260 >> 103 -3.76000000 -7.010000000 6.0900520 >> 104 -4.49000000 -6.890000000 5.8684410 >> 105 -5.18000000 -6.780000000 5.5725440 >> 106 -5.82000000 -6.670000000 5.1629830 >> 107 -6.47000000 -6.600000000 4.6995610 >> 108 -7.11000000 -6.540000000 4.1244410 >> 109 -7.65000000 -6.470000000 3.3780680 >> 110 -8.13000000 -6.430000000 2.5233760 >> 111 -8.50000000 -6.430000000 1.4426130 >> 112 2.97829900 -7.820000000 4.3988980 >> 113 2.03217000 -7.500000000 5.0857930 >> 114 1.18382200 -7.280000000 5.7606320 >> 115 0.29581110 -7.110000000 6.2103070 >> 116 -0.59600000 -6.930000000 6.3823580 >> 117 -1.44000000 -6.770000000 6.5033250 >> 118 -2.25000000 -6.620000000 6.5101180 >> 119 -3.03000000 -6.480000000 6.4460000 >> 120 -3.77000000 -6.370000000 6.3107120 >> 121 -4.47000000 -6.270000000 6.0932970 >> 122 -5.14000000 -6.190000000 5.7995190 >> 123 -5.78000000 -6.120000000 5.4028020 >> 124 -6.39000000 -6.080000000 4.8908120 >> 125 -7.01000000 -6.060000000 4.2984190 >> 126 -7.56000000 -6.040000000 3.5404370 >> 127 -8.06000000 -6.050000000 2.6823080 >> 128 -8.40000000 -6.110000000 1.6489780 >> 129 2.77299200 -7.310000000 4.5539250 >> 130 1.91551200 -7.000000000 5.3642300 >> 131 1.07253300 -6.760000000 6.0986120 >> 132 0.18507230 -6.540000000 6.4596450 >> 133 -0.68000000 -6.330000000 6.6232190 >> 134 -1.50000000 -6.130000000 6.6832550 >> 135 -2.28000000 -5.970000000 6.6998620 >> 136 -3.03000000 -5.830000000 6.6128910 >> 137 -3.74000000 -5.720000000 6.4739280 >> 138 -4.42000000 -5.630000000 6.2608390 >> 139 -5.09000000 -5.580000000 5.9735130 >> 140 -5.74000000 -5.550000000 5.6024800 >> 141 -6.35000000 -5.540000000 5.0869210 >> 142 -6.95000000 -5.560000000 4.4677590 >> 143 -7.48000000 -5.600000000 3.7069780 >> 144 -8.00000000 -5.660000000 2.8466630 >> 145 -8.33000000 -5.770000000 1.8582010 >> 146 2.66770300 -6.810000000 4.7262430 >> 147 1.86144800 -6.510000000 5.6374420 >> 148 1.01052700 -6.220000000 6.2719550 >> 149 0.13896630 -5.950000000 6.5830020 >> 150 -0.70200000 -5.700000000 6.7505190 >> 151 -1.50000000 -5.490000000 6.8400020 >> 152 -2.26000000 -5.310000000 6.8188040 >> 153 -2.99000000 -5.170000000 6.7217130 >> 154 -3.68000000 -5.060000000 6.5612970 >> 155 -4.36000000 -4.990000000 6.3690760 >> 156 -5.02000000 -4.950000000 6.0887320 >> 157 -5.67000000 -4.950000000 5.7230390 >> 158 -6.31000000 -4.970000000 5.2366770 >> 159 -6.90000000 -5.030000000 4.6082540 >> 160 -7.43000000 -5.120000000 3.8506270 >> 161 -7.94000000 -5.240000000 3.0098780 >> 162 -8.27000000 -5.400000000 2.0474690 >> 163 2.68803800 -6.330000000 4.8775010 >> 164 1.90268600 -6.020000000 5.7836710 >> 165 1.05038800 -5.670000000 6.3662480 >> 166 0.18388930 -5.350000000 6.6590510 >> 167 -0.64700000 -5.070000000 6.8431360 >> 168 -1.44000000 -4.830000000 6.9117180 >> 169 -2.19000000 -4.640000000 6.8782390 >> 170 -2.91000000 -4.500000000 6.7445040 >> 171 -3.60000000 -4.400000000 6.6120310 >> 172 -4.27000000 -4.330000000 6.4204160 >> 173 -4.94000000 -4.310000000 6.1494530 >> 174 -5.61000000 -4.320000000 5.7892010 >> 175 -6.25000000 -4.370000000 5.3065590 >> 176 -6.86000000 -4.470000000 4.6930880 >> 177 -7.38000000 -4.600000000 3.9471420 >> 178 -7.89000000 -4.760000000 3.1285350 >> 179 -8.24000000 -4.970000000 2.2044620 >> 180 2.82702400 -5.830000000 4.9467000 >> 181 2.05371100 -5.500000000 5.8308200 >> 182 1.19460400 -5.110000000 6.3915270 >> 183 0.31641750 -4.740000000 6.6787820 >> 184 -0.51800000 -4.430000000 6.8774210 >> 185 -1.31000000 -4.180000000 6.9387020 >> 186 -2.07000000 -3.980000000 6.8780140 >> 187 -2.79000000 -3.830000000 6.7569550 >> 188 -3.48000000 -3.730000000 6.6070700 >> 189 -4.16000000 -3.670000000 6.3980770 >> 190 -4.85000000 -3.660000000 6.1323900 >> 191 -5.54000000 -3.680000000 5.7833840 >> 192 -6.20000000 -3.750000000 5.3143680 >> 193 -6.81000000 -3.870000000 4.7064390 >> 194 -7.35000000 -4.030000000 3.9822400 >> 195 -7.85000000 -4.240000000 3.1729150 >> 196 -8.22000000 -4.480000000 2.3136000 >> 197 3.08097900 -5.320000000 4.9822890 >> 198 2.29895800 -4.970000000 5.8333040 >> 199 1.41497200 -4.530000000 6.3506440 >> 200 0.52100050 -4.130000000 6.6261750 >> 201 -0.32900000 -3.790000000 6.8034410 >> 202 -1.13000000 -3.510000000 6.8966640 >> 203 -1.90000000 -3.310000000 6.8182760 >> 204 -2.62000000 -3.160000000 6.6941330 >> 205 -3.34000000 -3.060000000 6.5647290 >> 206 -4.05000000 -3.000000000 6.3470340 >> 207 -4.76000000 -2.990000000 6.0664830 >> 208 -5.47000000 -3.030000000 5.7073250 >> 209 -6.15000000 -3.110000000 5.2333560 >> 210 -6.78000000 -3.250000000 4.6464220 >> 211 -7.32000000 -3.440000000 3.9304620 >> 212 -7.83000000 -3.670000000 3.1472680 >> 213 -8.21000000 -3.930000000 2.3631640 >> 214 3.39223900 -4.800000000 4.9659660 >> 215 2.60032300 -4.430000000 5.7800730 >> 216 1.68895800 -3.940000000 6.2552800 >> 217 0.77682770 -3.510000000 6.5265930 >> 218 -0.08230000 -3.140000000 6.7131680 >> 219 -0.89800000 -2.840000000 6.8060150 >> 220 -1.68000000 -2.640000000 6.7059600 >> 221 -2.42000000 -2.490000000 6.5855740 >> 222 -3.17000000 -2.370000000 6.4732960 >> 223 -3.91000000 -2.320000000 6.2396420 >> 224 -4.64000000 -2.320000000 5.9223800 >> 225 -5.38000000 -2.370000000 5.5366260 >> 226 -6.08000000 -2.480000000 5.0589720 >> 227 -6.73000000 -2.630000000 4.4890640 >> 228 -7.29000000 -2.840000000 3.8031080 >> 229 -7.79000000 -3.090000000 3.0483220 >> 230 -8.17000000 -3.350000000 2.3356600 >> 231 3.71774600 -4.280000000 4.9254030 >> 232 2.92679700 -3.880000000 5.6861150 >> 233 1.99234100 -3.350000000 6.1143080 >> 234 1.06585400 -2.890000000 6.3607580 >> 235 0.20066790 -2.500000000 6.5325130 >> 236 -0.61700000 -2.160000000 6.6705480 >> 237 -1.41000000 -1.940000000 6.6024580 >> 238 -2.19000000 -1.790000000 6.4638170 >> 239 -2.96000000 -1.680000000 6.3001770 >> 240 -3.74000000 -1.640000000 6.0410610 >> 241 -4.52000000 -1.660000000 5.6940880 >> 242 -5.28000000 -1.730000000 5.2799060 >> 243 -5.99000000 -1.850000000 4.7980760 >> 244 -6.67000000 -2.010000000 4.2535300 >> 245 -7.25000000 -2.240000000 3.6009800 >> 246 -7.74000000 -2.510000000 2.8840790 >> 247 -8.13000000 -2.770000000 2.2342210 >> 248 3.97118700 -3.770000000 4.8390360 >> 249 3.22193700 -3.320000000 5.5322630 >> 250 2.30483700 -2.750000000 5.9389680 >> 251 1.38410000 -2.270000000 6.1664470 >> 252 0.53003250 -1.850000000 6.3445430 >> 253 -0.29500000 -1.500000000 6.4360500 >> 254 -1.11000000 -1.280000000 6.3516530 >> 255 -1.90000000 -1.120000000 6.2129660 >> 256 -2.72000000 -0.998000000 6.0384500 >> 257 -3.55000000 -0.970000000 5.7457130 >> 258 -4.37000000 -1.010000000 5.3679390 >> 259 -5.14000000 -1.120000000 4.9263980 >> 260 -5.89000000 -1.250000000 4.4499220 >> 261 -6.60000000 -1.420000000 3.9335270 >> 262 -7.20000000 -1.660000000 3.3298900 >> 263 -7.69000000 -1.940000000 2.6706230 >> 264 -8.08000000 -2.210000000 2.0644670 >> 265 4.11903900 -3.300000000 4.6961930 >> 266 3.46500100 -2.770000000 5.3423200 >> 267 2.59829700 -2.160000000 5.7209770 >> 268 1.72666800 -1.640000000 5.9567510 >> 269 0.89305940 -1.190000000 6.1180350 >> 270 0.06544720 -0.846000000 6.1472300 >> 271 -0.75300000 -0.621000000 6.0545990 >> 272 -1.57000000 -0.491000000 5.8699780 >> 273 -2.44000000 -0.369000000 5.6678410 >> 274 -3.33000000 -0.325000000 5.3729640 >> 275 -4.20000000 -0.369000000 4.9944420 >> 276 -5.00000000 -0.512000000 4.5231720 >> 277 -5.78000000 -0.665000000 4.0474330 >> 278 -6.50000000 -0.854000000 3.5439690 >> 279 -7.12000000 -1.100000000 2.9874890 >> 280 -7.64000000 -1.390000000 2.4052130 >> 281 -8.04000000 -1.670000000 1.8520060 >> 282 4.34296300 -2.920000000 4.6258990 >> 283 3.62177200 -2.200000000 5.1395670 >> 284 2.84145700 -1.550000000 5.4662790 >> 285 2.06232900 -1.020000000 5.6505990 >> 286 1.29929700 -0.591000000 5.7613550 >> 287 0.51633110 -0.250000000 5.7881260 >> 288 -0.31100000 0.007965269 5.7201490 >> 289 -1.19000000 0.155720400 5.5293150 >> 290 -2.12000000 0.252159300 5.2654910 >> 291 -3.12000000 0.323921600 4.9478560 >> 292 -4.13000000 0.283673000 4.5344500 >> 293 -5.06000000 0.064145830 3.9873830 >> 294 -5.95000000 -0.164000000 3.4330840 >> 295 -6.74000000 -0.415000000 2.8827030 >> 296 -7.36000000 -0.693000000 2.3482680 >> 297 -7.77000000 -0.971000000 1.8882020 >> 298 -8.00000000 -1.190000000 1.6149230 >> 299 NA NA NA >> >> >> The same issue occurs when I try to upload a single file using the >> following line: >> >> readLandmarks.csv("path/Ind1.csv", 1:299, y = 4:6, rownames = NULL, >> header = TRUE, >> dec = ".", sep = ",") >> >> I have attached an example of the file I tried to upload in the second >> case. As you can see, the coordinates for the first landmark >> (-3.34E+00,-1.03E+01,4.279302e+00) were not uploaded in R. >> >> Can somebody tell me where the error is? >> >> Thanks in advance, >> >> Paolo >> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "Morphmet" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To view this discussion visit >> https://groups.google.com/d/msgid/morphmet2/CANPrD1jrqM2CMGGNJsqJrmvCXOg61pZxyVrtv%2B33oq14RrSW9w%40mail.gmail.com >> <https://groups.google.com/d/msgid/morphmet2/CANPrD1jrqM2CMGGNJsqJrmvCXOg61pZxyVrtv%2B33oq14RrSW9w%40mail.gmail.com?utm_medium=email&utm_source=footer> >> . >> > -- You received this message because you are subscribed to the Google Groups "Morphmet" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion visit https://groups.google.com/d/msgid/morphmet2/CANPrD1gk%3DcZUF6M3oJ2%2BO6Xkqb6EBRukOLTVdzeKRdkExvMD0w%40mail.gmail.com.
